Detail information of GWHGAAEX007163/evm.TU.scaffold_198.52
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|434399215|ref|YP_007133219.1| | 1.00E-19 | LSU ribosomal protein L28P [Stanieria cyanosphaera PCC 7437] |
| nr | gi|731320744|ref|XP_010670975.1| | 2.70E-28 | PREDICTED: 50S ribosomal protein L28, chloroplastic [Beta vulgaris subsp. vulgaris] |
| Swissprot | tr|P30956|RK28_TOBAC | 2.00E-29 | 50S ribosomal protein L28, chloroplastic (Precursor) |
| trEMBL | tr|K4CW67|K4CW67_SOLLC | 2.00E-27 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc09g090410.2.1} |
| TAIR | AT2G33450 | 1.00E-27 | Ribosomal L28 family |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000201 | 1211601 | 1213061 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007163
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00830.18 | Ribosomal_L28 | 137 | 188 | 6.70E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02902 | RP-L28, MRPL28, rpmB | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.280 |
| SRR2545915 | Juvenile tuber | 1.260 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.890 |
| SRR5643514 | five period of Gastrodia elata | 0.670 | |
| SRR5643515 | five period of Gastrodia elata | 1.150 | |
| SRR5643524 | five period of Gastrodia elata | 0.580 | |
| SRR5643525 | five period of Gastrodia elata | 0.560 | |
| SRR5643528 | five period of Gastrodia elata | 0.720 | |
| SRR5643658 | five period of Gastrodia elata | 1.900 | |
| SRR5643659 | five period of Gastrodia elata | 3.440 | |
| SRR5643660 | five period of Gastrodia elata | 1.580 | |
| SRR5643661 | five period of Gastrodia elata | 3.030 | |
| SRR5643662 | five period of Gastrodia elata | 3.350 | |
| SRR5643663 | five period of Gastrodia elata | 1.930 | |
| SRR5643664 | five period of Gastrodia elata | 1.760 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.240 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.430 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.390 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.160 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.380 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.140 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.180 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.260 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.920 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.920 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.30 |
| Juven | Juvenile tuber | 0.36 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.14 | |
| Mother_Juven | Mother tuber of Juvenile | 0.25 |