Gene detail

Detail information of GWHGAAEX007164/evm.TU.scaffold_198.53

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2376	Signal recognition particle, subunit Srp72
nr	gi\|672160355\|ref\|XP_008799956.1\|	PREDICTED: signal recognition particle subunit SRP72 [Phoenix dactylifera]
trEMBL	tr\|M0RLA5\|M0RLA5_MUSAM	Signal recognition particle subunit SRP72 {ECO:0000256\|PIRNR:PIRNR038922}
TAIR	AT1G67680	SRP72 RNA-binding domain

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000201	1214307	1222572	-

Transcript Sequence
>GWHTAAEX007164 CTGATTATGAGAATATCATACAAAACTTCAACACTTGGCATAAATACCACTCGCAGCCTTCTTAATTTGCTAATTTTAATCATAAAATACATTTCCGTTTATCACAATACCACTCACTGCTTTCTTCTTCAATTTTATTTTTCGCTTCGCATTCGAACCTTCCTACTGAATCATGGCGCCCAAGGCGAAGCCGAAACCCTCTCTTTCAGCCGCCAACGCTCGGACGCCATCCTTGGAGGATCTATTCTCCTCCCTCTGCCGCCATTCCGAGAAATTTGAGTATGATCAGTGCGTCAAGATCGCAGATCAAGTCCTTTCGATCGCCCCCGGAGACGAGGATGCCATTCGGTGCAAGATCGTTGCTTTAATAAAATCGGACTCTATGGATAAAGCACTCTCGGCGATTCTCGCAGCTGAGAGCCTGCCCATCGATCTGAAATTTTACAAGGCATATTGCCTGTATAGGCAAAACAAACTGCAAGATGCATTGGAATCGTTAAACAATCAGGAAAGGAGTCCTATGGTTTTACAATTGGAGTCTCAAATTCTATATCGACTAGGGAAAATGGATGCGTGTATGCAAAGCTATGAAAAGCTACAAAAGCTCAAGGTTGATTCAATTGATGTAAAAACAAATATTATTGCCACTCTGGTATCAGCTGGAAGATCTAATGAAGTACAGGGAGTGATGGATGTTCTGAAAGTTAAAGCTTCCAATAGCTTTGAGCTAGCATACAATACCGCTTGTTCTCTCATTGAAAAAAAAATATATGCAGAAGCTGAACAACAACTACTTTCAGCTCGAAGAATCGGCCAGGAAATGCTAATGGAGGAGGATTATGCGGATGAAGAGATAGAAACGGAGCTAGCCCCAATATCTGTACAGCTGGCATATATCCAGCAGTTACTTGGAAGGAAGCAGGAGGCAATGGAGGCTTACATTGGCATAATAAGCCGCAACCTGGCCGATGCTCCATCACTCGCCATCGCCACCAACAATCTCATAGCATTGAGGGGAGGCGCAAAAGATGCTTCTGATGGTCTGAGGAGGCTCGACAAGTTGATAGAGAAGAAGGGTGAAGATGGCTCTTTCAAGCTCGCCGGCGGCCTCGATTTCAAATTGTCGCAGCGGCAAAAGGAGTCGCTGTACGCCAACCGCCTGCTTCTGCTCCTTCACACCAACAGAATGGATCAGGCTCGAGAGCTGGCGTCCGCGCTTCCTGAGATGTTCCCCGGGAGCATGGCAGCTGTCCTTCTCCAGGCCGCTGTGCTTGTGAAAGAGAAGAAGATCCCGAGGGTGGAGGAGTTGTTGCTGCATTTCGCGGAAAAGTTCCCAGAAAAAGCGAAGGTCATCCTGCTGGCTCGAGCCCAGATTTCAGCCTGTGGTGGACGGCCGCAAATTGCGGCGGAGTCCTTGACCATGATGCACGATGTCCGGCATATGCCCGCCGTGGTGGCGACAATGGTTTCGCTGAAAGAGCGGGTCGGCGATCTCGACGGAGCATCCGGCGTGCTGGACTCAGCCGTCCAGTTCTGGAGTGAGGGTGCGATGAAGACAGAAGAAGATAACGGCGTTATGCTGGGCGTGATAATGCCGGAGGCGGCGGCGTTCAAGCTCCGGCATGGCCGTGAAGGAGAGGCTTTCGAGCTCTACGAGCGATTGGTGCAGCAGCATGGGAAGAATAGCAGTGCGGAAGCGCTGGCTGGGCTGGTCAAGACAGCTGCTCACATCGACCTCGCGAAGGCTGAGTTGTACGAGCGGCGGCTGAGGGAGCTGCCGGGAACCATCGCCGATGCGGAAACCCTTGAGAAGAGCTGCGGAGCGGCGGCTGGAAAGATTGAGGAGAAGGAGGAGAAGCAGTCAAAGGGGAAGAGGAAGAGGAAGAGGAAGGCGAAGAGGTACCCCAAGGGCTTTGATCCCGCAAACCCAGGGCCGCCGCCAGACCCTGAGAGATGGCTGCCCAGGAAAGAGAGGTCCAGCTACAGGCCCAAGAGGAAGGACAAGAGGGTCCTTCAAGTCAGGGGCTCTCAGGGAGCCATTGCTCGCGACAAGCACCATGATTCAAATGGCTCATCATCCTCCTCCGCCGCTGCCACCAATAATAATGCACCGTCGACTCAGAGGTTGCCGGGTCAGATTTCCAAAGGCAGAAGGAAGAAGTAAGGCGCAGCTTATGCCTTTTCCATTTGCATGCAGGAGAAAATATTGTCTTTTTATTTGTTGAAACTTTTGGATAGATTTTTTTTTCTTATAATAGATTTCAACTTTGCCAGTGTGATTGTTCTATTCATAAACTTGTTTATGTTTTCTGTGATGGTTGTTTGAGAGAAAGTGGTCCATCTCAGTGGCCTTAGTTTGCTTTAAAACACCATCTTGAGTTAAGAAGCTTAAATAAGCTGTCGAGCCTATTTAGGTGGGGGTGAGTTGACTATCAAAACTGTGTTATTCCCAAAAAAATTGTTAAAACATCTCAAGTGCT

Network for GWHGAAEX007164

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17004.4	SRP_TPR_like	37	158	5.60E-13
PF08492.11	SRP72	555	606	6.20E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03108	SRP72	Protein export	map03060

Gene Ontology

GO term	Ontology	Name
GO:0006614	Biological Process	SRP-dependent cotranslational protein targeting to membrane
GO:0005515	Molecular Function	protein binding
GO:0008312	Molecular Function	7S RNA binding
GO:0048500	Cellular Component	signal recognition particle

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	27.800
SRP064423	SRR2545915	Juvenile tuber	32.530
SRP108465	SRR5643513	five period of Gastrodia elata	44.410
	SRR5643514	five period of Gastrodia elata	49.020
	SRR5643515	five period of Gastrodia elata	42.430
	SRR5643524	five period of Gastrodia elata	46.600
	SRR5643525	five period of Gastrodia elata	32.220
	SRR5643528	five period of Gastrodia elata	34.540
	SRR5643658	five period of Gastrodia elata	35.440
	SRR5643659	five period of Gastrodia elata	54.610
	SRR5643660	five period of Gastrodia elata	63.720
	SRR5643661	five period of Gastrodia elata	62.350
	SRR5643662	five period of Gastrodia elata	55.160
	SRR5643663	five period of Gastrodia elata	49.850
	SRR5643664	five period of Gastrodia elata	54.480
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	46.800
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	30.450
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	49.700
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	42.520
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	35.780
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	32.150
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	41.010
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	36.670
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	50.880
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	45.260
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	52.070
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	52.070
SRP279888	Gastro	Gastrodia elata tuber	59.08
	Juven	Juvenile tuber	94.68
	Mother_Gastro	Mother tuber of Gastrodia elata	36.00
	Mother_Juven	Mother tuber of Juvenile	60.35