Detail information of GWHGAAEX007170/evm.TU.scaffold_198.59
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1175 | 0 | Acyl-CoA synthetase |
| nr | gi|672175744|ref|XP_008807938.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 13 [Phoenix dactylifera] |
| Swissprot | tr|F4I096|MED13_ARATH | 0 | Mediator of RNA polymerase II transcription subunit 13 |
| trEMBL | tr|M0TGZ5|M0TGZ5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P12570_001} |
| TAIR | AT1G55320 | 0 | acyl-activating enzyme 18 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000201 | 1339677 | 1405777 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007170
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF06333.11 | Med13_C | 1360 | 1968 | 6.90E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K15164 | MED13 | Thyroid hormone signaling pathway | map04919 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter |
| GO:0003712 | Molecular Function | transcription cofactor activity |
| GO:0016592 | Cellular Component | mediator complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 28.090 |
| SRR2545915 | Juvenile tuber | 22.230 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.440 |
| SRR5643514 | five period of Gastrodia elata | 15.110 | |
| SRR5643515 | five period of Gastrodia elata | 14.560 | |
| SRR5643524 | five period of Gastrodia elata | 14.980 | |
| SRR5643525 | five period of Gastrodia elata | 18.160 | |
| SRR5643528 | five period of Gastrodia elata | 14.400 | |
| SRR5643658 | five period of Gastrodia elata | 17.390 | |
| SRR5643659 | five period of Gastrodia elata | 16.210 | |
| SRR5643660 | five period of Gastrodia elata | 18.190 | |
| SRR5643661 | five period of Gastrodia elata | 14.650 | |
| SRR5643662 | five period of Gastrodia elata | 16.420 | |
| SRR5643663 | five period of Gastrodia elata | 16.720 | |
| SRR5643664 | five period of Gastrodia elata | 17.300 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.400 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.150 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.930 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.530 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.210 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 18.020 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.670 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 17.150 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 17.540 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 17.960 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.380 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.380 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.06 |
| Juven | Juvenile tuber | 16.80 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 19.25 | |
| Mother_Juven | Mother tuber of Juvenile | 20.67 |