Gene detail

Detail information of GWHGAAEX007172/evm.TU.scaffold_198.61

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743864111\|ref\|XP_010943952.1\|	2.61E-25	PREDICTED: uncharacterized protein LOC105061561 isoform X3 [Elaeis guineensis]
Swissprot	tr\|Q6WLH4\|SMH3_MAIZE	7.00E-08	Single myb histone 3
trEMBL	tr\|A0A067JYW0\|A0A067JYW0_JATCU	1.00E-25	Uncharacterized protein {ECO:0000313\|EMBL:KDP27998.1}
TAIR	ECU01G0760	6.00E-08	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000201	1489556	1491082	-

Transcript Sequence
>GWHTAAEX007172 ATGGCGAAATGTACTCGGATTCCACCGGAACACGAAAAATCAAATCCTTCGTCGTCGTCGTCAACCGCCGCCAGCATCACCGGCGACGTCGACCGGCTCCGGACACTGGACAATAAGACTGCCTCTTCGATGTTCGAGTACATCCTGCGGCAGCGATGGATCCACGATTGCGTCGTAAATGCGGTCTTCATCGCCCTTCCCCTCGCCGATCCTCTTTCGCCCAGGCTCAAGAAAGCCATCTTCCTCCGGCGCATGGCTTCCGATCTGACTCTCCGTTCTCTCTCTGAGGAAACCCTAACAATCCTCGAGCTCATCGAGGAGCTCGACCGCGAGCATGGCCGTACCCCCCCTCCTAACTCCATAAAGGCCGCTTACTGCGCCGTTGCCCGGTACTGCACCGAAGCCGCGCTCGGCCAAAATTCGATCGACTTCTTAGACTCCTACTGCCGGATTTGGGTGCTGCGCATCGGCGACCTTCAGAAGTCGGCGGCGGCCGCTGCTTTGATGTCCGATGGCCTTCGAGAGGCGCGGGATGCTTTCAGGAAGCTGGTGGATGATCCTAAGCGCGCGCCCCCGTTGATTGCAGATTTGACTGACACCCTCAATCTCGTTCGGCATTATCTGGAGGAGGCGTGGGATATGCCACCCTTGCTCCCTCTTCCTGTTCATGATGATGATAGCAGTACCGAACAGGCAACATATTCGAGAGCAAATGGTCCCCCGGACGCCGCAGAAGGGCGGCCATCGTCAAGAGGTTGCCAGACTCATAACCCCTGGAAACGTCTTCTGAAGGAAAGGGGAATTCTGCAGTCCAGTGATGTGAGCATACTGTTGCAAAGGATAGAGCAAGAGTTGTCTCTCAAAGAAAAGAATGATCATGCGAAGAAGAAGAAGAGGGCGCAACACGCGAGGGAAACCGAGTTCACAAGGCTTGATGCAACGCACGATGCTAATAATACTACATTACTGGCCTTGAATTGTGAGGAAACAGCATGCACAGGGGAATTAACTACAGAAGGTGATGATAATGATGATGGTCGGATGCAGAAACAGGAATTCAGTGTATGCATGCTGAATAAGTTTTCGGAATCTCCATGCTTGATTGAAATAGAGGAAAGCCAGAGCGAGGAGCTGGAGAATGCAAGCCCTGCAGCCCAACAAGGCAACAGCGCCCCCATTTCTCATCTGAAGATGCCGGCCAGCCCTATTGCTTCCATAGAGAAAACATCAGCAATTCATGATACAATCGAGCTGGCTAATCAGCCGCCGCCTCGGGAGCGAAGGTATCATTTACGCAGCCCAAAGAGACCTGTTTCACCATTGAAGCCGGTTGATGATGGCAAAAGATATACTAAACGAAGGAAAATGAGGAAGTGGAGTACGCTGGAAGAAGATACTTTGCTGGAGGCTGTGAGACAGTATGGCAAAGGGAACTGGAAGTTCATTCTCAGCAACTGCAACGCCATTTTTGAACAAAGAACTGAGATTGATCTAAAGGATAAGTGGAGAAATATGAGTAAAAAATAG

Network for GWHGAAEX007172

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	458	504	2.50E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.730
SRP064423	SRR2545915	Juvenile tuber	3.730
SRP108465	SRR5643513	five period of Gastrodia elata	20.990
	SRR5643514	five period of Gastrodia elata	12.670
	SRR5643515	five period of Gastrodia elata	31.020
	SRR5643524	five period of Gastrodia elata	20.830
	SRR5643525	five period of Gastrodia elata	18.380
	SRR5643528	five period of Gastrodia elata	6.550
	SRR5643658	five period of Gastrodia elata	9.300
	SRR5643659	five period of Gastrodia elata	11.720
	SRR5643660	five period of Gastrodia elata	30.440
	SRR5643661	five period of Gastrodia elata	19.270
	SRR5643662	five period of Gastrodia elata	20.200
	SRR5643663	five period of Gastrodia elata	12.800
	SRR5643664	five period of Gastrodia elata	22.850
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	14.830
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.590
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.900
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.320
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.770
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.360
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.840
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.910
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.990
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.990
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.440
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.440
SRP279888	Gastro	Gastrodia elata tuber	17.93
	Juven	Juvenile tuber	52.70
	Mother_Gastro	Mother tuber of Gastrodia elata	31.53
	Mother_Juven	Mother tuber of Juvenile	46.87