Detail information of GWHGAAEX007175/evm.TU.scaffold_1980.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG10581.00E-47Vesicle coat complex COPI, beta subunit
nrgi|743804766|ref|XP_010927271.1|7.37E-52PREDICTED: coatomer subunit beta-1-like [Elaeis guineensis]
Swissprottr|Q9SV21|COPB1_ARATH3.00E-48Coatomer subunit beta-1
trEMBLtr|W1PWK8|W1PWK8_AMBTC1.00E-51Coatomer subunit beta {ECO:0000256|PIRNR:PIRNR005727}
TAIRAT4G314901.00E-47Coatomer, beta subunit

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000197233713709+
Transcript Sequence

Network for GWHGAAEX007175

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01602.19Adaptin_N211122.20E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0016192Biological Processvesicle-mediated transport
GO:0006886Biological Processintracellular protein transport
GO:0030117Cellular Componentmembrane coat

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms6.550
SRR2545915Juvenile tuber3.960
SRP108465SRR5643513five period of Gastrodia elata2.400
SRR5643514five period of Gastrodia elata0.470
SRR5643515five period of Gastrodia elata1.110
SRR5643524five period of Gastrodia elata0.470
SRR5643525five period of Gastrodia elata15.810
SRR5643528five period of Gastrodia elata1.240
SRR5643658five period of Gastrodia elata1.420
SRR5643659five period of Gastrodia elata1.410
SRR5643660five period of Gastrodia elata2.130
SRR5643661five period of Gastrodia elata3.170
SRR5643662five period of Gastrodia elata4.500
SRR5643663five period of Gastrodia elata2.420
SRR5643664five period of Gastrodia elata1.490
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_14.750
SRR6049655Rhizomagastrodiae_C368-T10_good_12.800
SRR6049656Rhizomagastrodiae_C368-T07_good_12.700
SRR6049657Rhizomagastrodiae_C368-T07_good_12.380
SRR6049658Rhizomagastrodiae_C368-T04_good_13.400
SRR6049659Rhizomagastrodiae_C368-T04_good_14.800
SRR6049660Rhizomagastrodiae_C368-T01_good_13.710
SRR6049661Rhizomagastrodiae_C368-T04_good_13.030
SRR6049662Rhizomagastrodiae_C368-T01_good_11.140
SRR6049663Rhizomagastrodiae_C368-T01_good_16.710
SRR6049664Rhizomagastrodiae_C368-T10_good_10.000
SRR6049665Rhizomagastrodiae_C368-T10_good_10.000
SRP279888GastroGastrodia elata tuber 15.54
JuvenJuvenile tuber9.20
Mother_GastroMother tuber of Gastrodia elata 13.97
Mother_JuvenMother tuber of Juvenile 13.05