Detail information of GWHGAAEX007187/evm.TU.scaffold_199.12
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 6.00E-107 | FOG: PPR repeat |
| nr | gi|743818766|ref|XP_010931320.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g09040, mitochondrial-like [Elaeis guineensis] |
| Swissprot | tr|Q9SS83|PP220_ARATH | 2.00E-107 | Pentatricopeptide repeat-containing protein At3g09040, mitochondrial (Precursor) |
| trEMBL | tr|F6HIN1|F6HIN1_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB52077.1} |
| trEMBL | tr|F6HIN1|F6HIN1_VITVI | 2.00E-17 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB52077.1} |
| TAIR | AT3G09040 | 6.00E-107 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000202 | 315077 | 317434 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007187
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 124 | 168 | 9.30E-08 |
| PF01535.19 | PPR | 200 | 220 | 0.64 |
| PF01535.19 | PPR | 300 | 327 | 0.15 |
| PF01535.19 | PPR | 402 | 422 | 0.029 |
| PF01535.19 | PPR | 432 | 460 | 0.78 |
| PF01535.19 | PPR | 532 | 558 | 0.05 |
| PF13041.5 | PPR_2 | 631 | 677 | 9.40E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.220 |
| SRR2545915 | Juvenile tuber | 1.800 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.920 |
| SRR5643514 | five period of Gastrodia elata | 4.010 | |
| SRR5643515 | five period of Gastrodia elata | 2.810 | |
| SRR5643524 | five period of Gastrodia elata | 3.270 | |
| SRR5643525 | five period of Gastrodia elata | 0.690 | |
| SRR5643528 | five period of Gastrodia elata | 0.560 | |
| SRR5643658 | five period of Gastrodia elata | 0.770 | |
| SRR5643659 | five period of Gastrodia elata | 3.650 | |
| SRR5643660 | five period of Gastrodia elata | 3.470 | |
| SRR5643661 | five period of Gastrodia elata | 4.410 | |
| SRR5643662 | five period of Gastrodia elata | 2.650 | |
| SRR5643663 | five period of Gastrodia elata | 3.330 | |
| SRR5643664 | five period of Gastrodia elata | 2.660 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.490 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.410 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.910 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.320 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.980 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.310 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.110 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.460 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.950 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.020 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.420 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.420 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.64 |
| Juven | Juvenile tuber | 3.71 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.40 | |
| Mother_Juven | Mother tuber of Juvenile | 1.00 |