Detail information of GWHGAAEX007190/evm.TU.scaffold_199.15
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|427716889|ref|YP_007064883.1| | 4.00E-84 | uracil phosphoribosyltransferase [Calothrix sp. PCC 7507] |
| KOG | KOG4203 | 5.00E-118 | Armadillo/beta-Catenin/plakoglobin |
| nr | gi|695062485|ref|XP_009419713.1| | 1.90E-135 | PREDICTED: uracil phosphoribosyltransferase-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|P93394|UPP_TOBAC | 3.00E-129 | Uracil phosphoribosyltransferase |
| trEMBL | tr|W9QG49|W9QG49_9ROSA | 2.00E-129 | Uracil phosphoribosyltransferase {ECO:0000313|EMBL:EXB36718.1} |
| TAIR | AT3G53900 | 5.00E-118 | uracil phosphoribosyltransferase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000202 | 377590 | 385648 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007190
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14681.5 | UPRTase | 80 | 287 | 5.20E-68 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00761 | upp, UPRT | Metabolic pathways | map01100 |
| Pyrimidine metabolism | map00240 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009116 | Biological Process | nucleoside metabolic process |
| GO:0006223 | Biological Process | uracil salvage |
| GO:0004845 | Molecular Function | uracil phosphoribosyltransferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 16.290 |
| SRR2545915 | Juvenile tuber | 8.780 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 29.770 |
| SRR5643514 | five period of Gastrodia elata | 35.640 | |
| SRR5643515 | five period of Gastrodia elata | 32.100 | |
| SRR5643524 | five period of Gastrodia elata | 31.680 | |
| SRR5643525 | five period of Gastrodia elata | 25.360 | |
| SRR5643528 | five period of Gastrodia elata | 28.870 | |
| SRR5643658 | five period of Gastrodia elata | 23.160 | |
| SRR5643659 | five period of Gastrodia elata | 13.460 | |
| SRR5643660 | five period of Gastrodia elata | 15.230 | |
| SRR5643661 | five period of Gastrodia elata | 13.440 | |
| SRR5643662 | five period of Gastrodia elata | 10.960 | |
| SRR5643663 | five period of Gastrodia elata | 6.680 | |
| SRR5643664 | five period of Gastrodia elata | 8.200 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 34.870 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 41.400 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 45.260 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 25.300 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 30.730 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 27.160 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 26.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 22.620 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 41.540 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 36.830 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 70.410 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 70.410 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.18 |
| Juven | Juvenile tuber | 9.15 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 24.39 | |
| Mother_Juven | Mother tuber of Juvenile | 11.32 |