Detail information of GWHGAAEX007192/evm.TU.scaffold_199.17
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|695006368|ref|XP_009389673.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9STF3|PP265_ARATH | 0 | Pentatricopeptide repeat-containing protein At3g46790, chloroplastic (Precursor) |
| trEMBL | tr|R0HEW9|R0HEW9_9BRAS | 0 | Uncharacterized protein {ECO:0000313|EMBL:EOA23605.1} |
| trEMBL | tr|R0HEW9|R0HEW9_9BRAS | 7.00E-25 | Uncharacterized protein {ECO:0000313|EMBL:EOA23605.1} |
| TAIR | AT3G46790 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000202 | 392430 | 394579 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007192
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 74 | 100 | 0.008 |
| PF01535.19 | PPR | 102 | 128 | 1.30E-05 |
| PF01535.19 | PPR | 179 | 201 | 0.016 |
| PF13041.5 | PPR_2 | 206 | 253 | 1.20E-10 |
| PF01535.19 | PPR | 281 | 305 | 0.14 |
| PF14432.5 | DYW_deaminase | 380 | 495 | 9.40E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.780 |
| SRR2545915 | Juvenile tuber | 0.280 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.400 |
| SRR5643514 | five period of Gastrodia elata | 0.490 | |
| SRR5643515 | five period of Gastrodia elata | 0.270 | |
| SRR5643524 | five period of Gastrodia elata | 0.630 | |
| SRR5643525 | five period of Gastrodia elata | 0.490 | |
| SRR5643528 | five period of Gastrodia elata | 1.060 | |
| SRR5643658 | five period of Gastrodia elata | 0.170 | |
| SRR5643659 | five period of Gastrodia elata | 0.950 | |
| SRR5643660 | five period of Gastrodia elata | 0.490 | |
| SRR5643661 | five period of Gastrodia elata | 0.330 | |
| SRR5643662 | five period of Gastrodia elata | 1.060 | |
| SRR5643663 | five period of Gastrodia elata | 1.020 | |
| SRR5643664 | five period of Gastrodia elata | 1.200 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.310 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.280 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.410 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.400 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.930 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.710 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.730 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.770 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.720 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.190 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.650 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.650 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.29 |
| Juven | Juvenile tuber | 0.53 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.49 | |
| Mother_Juven | Mother tuber of Juvenile | 1.87 |