Gene detail

Detail information of GWHGAAEX007196/evm.TU.scaffold_199.21

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1946	4.00E-65	RNA polymerase I transcription factor UAF
nr	gi\|743762396\|ref\|XP_010907938.1\|	0	PREDICTED: uncharacterized protein At5g08430-like isoform X9 [Elaeis guineensis]
Swissprot	tr\|Q9SD34\|C3H44_ARATH	2.00E-82	Zinc finger CCCH domain-containing protein 44
trEMBL	tr\|M0T1R3\|M0T1R3_MUSAM	8.00E-171	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P25880_001}
TAIR	AT5G63700_2	4.00E-65	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000202	431758	474442	+

Transcript Sequence
>GWHTAAEX007196 GCAGAATAAAAAAAGCGCTGACTAAAGGTCCCACACACCGCCTGGTGGTGGGTCCAAATGCCCAGGCCACTCTGGTACCAGCGTTCATCCCGACGCGGCGCTTGCTTCGCACCAATCGTGCCGGCGATGGACGGCTCACCCATCGGCAAATTTTCTTCCTTTCTTCAATCGATGGAGCCACAGCAGCACTCCTCGGATCCGCAAGGGGAGAGGGCCGAAGGGATTATGATTCCTGCCATTCATAGCTTCGGCCTCGGAGCGATCCGAAAGAGAGAGAGAATGGGAAAAAGGAGGAAAACCATCGACAAGGACGATTTGTCAGAGGATTACTGCTTCGTCTGCAAGGATGGAGGCGAGATCCGTGTTTGCGATTTCAAAAATTGCCTTAAATCTTATCATCCACATTGTCTGAAGAAGGATGAATCGTTTCTTGAGTCCGGTGAAAGATGGACTTGTGATTGGCATTCATGCTACAATTGCACCAGAAGTTCGATATTTAAATGTTTTTGCTGTCCATACTCCTGCTGTCGAACGTGCATTGGGGAATCTGAGTTTGTTAAAGTAAAAGGAACAAAAGGCTTTTGCAATAATTGCTTAAGGATTGCAAAATTAATTGAAGAAAATGCTGATGTTGATTCCGATGGGGATATAGTGGACTTTGCAGACACCGATACGTTTGAATTCCTGTTCAAAGACTACTGGGAAATAATCAAAGAAAAAGAAAGACTGTCATTGGCTGATCTGCAAACAGCTGATGATCTTCTCAAGAGGGGAGAAAAGTTCAAGTGCTTGTCAGATCTAGATGAAAATTTTGAAGAGAAAGAGGAACATGAAGGGTCAGATGATGATTGTGGTGATAAGTTTATTACTTCTAATGAGTTAATGAATCAACAGAATCAGATGAAAATAATGAAGGAAAAATTCAAGTCAAAGAAGAAGAATTATATTGGCTGGGCGTCCAAGGAGCTGATTGAGTTTCTTAATTCTCTTGGAAAGGATACACAACAACCTATTAGTCAACATGATGTGTATGAGATTGTAAAAAATTATATCCAAGCAAGCAATCTTCTACGCCATGATAAAAAAAAGAAGAGGCATGTGTATTGCGATGCAAGGTTGCTCTCCCTTTTTAGGAGGAAGAAACTAAACTTTTTTAAAATATATAGTTTGCTGGAGAAGCATTTTGCTGAGAATGATGAATCTGATGACGAATCATTTAGTTTTGAAGAAGATGAATATGGAAAGTCTGTTAAGAGGCAAAGAGTTGGCAAGTCTTCCTCCAAACAAAAGACAGAAGGGCAGCACTTTGGGGAACATCAGTTGCAGTCTCCCAAAAAATGCTTTGCTTCAATAACTGAAGCTAATATCAAATTAATATACCTTAAGCGCTCCCTTATTGTAGAGCTAATGAAGGACCCAAATACATTTGAAACCAAAGTTATTGGGTGCTTTGTAAGAAGAAAGAGTGATCCAAAAGATAACTATGGTTACGGACCTCTTCAGAAAATGTACCAGCTTAATCAAATCACTGGTGTGAAAAAGTCCTCAGAAGAATACAAATTAGGGGATATTAATACAGACATTGTCTTTTGTGTTTCCAATTATTGCAAGGATGTTCAAATATCTATGTTATCAGATGATAATTTTGAGGAGGAGGAATGTGAGGATTTACGGAAACTTGTGAAGGAAGGTCTCTTTAAGAGACCTGGCGTTGTTGAGCTGAAGGAAAAAATCAGAACTATTCACGAGGTTATGGTGAAACATTCGGTGCAAAAAGAGCTTCTGAAACTGGGTAAACTGATTGAACGTGCAAATGAGAAAGGTTGGCGCAAAGAGTTATTTGATTACATTGAGAGGAGAAAGCTTCTTAATAAACCAGAGGAAATTATGCGCCTTATGAAGGAATTGCCTGATGTCACTCCAGATATGGAGGATGATACTGCTGAAGATGGCAAGCTACATGCTACAGTGAAGAATGTAACCAACCAGAATGAGAGAGAGTATCAAGCCTCAGCGAACTTTCAGAGTGCTAAATTGGGGGTTATAACCGCTACAAAAATGATAAGTTTTGAAGTGAAAAGCGCAGATGGTACCATCAGAATGGAATCTACTGAGAATGCAGCTAATCCTGATTCGCTAATTACCCGAGAAAAGCATGAAGGTTGTGAAAACTGTGCCTCAAATGTTATAGAGATAGATGACGAAGATGAAGCAGCTGGTAACAATGGAGGTTCTTCTGAAGTTAATATTATAGATCTGAATGTGGCAGATGGAAATCCTAATTTGATGGAGAATGAAGAGGAACTCCTCTTGCACATATGGAAATACTTAGATCCCTTGGGAAATGTTCAGGGGCCCTTCTCCTTGCGTACCCTTAAGTTCTGGATGGATGAAGGCTTCTTTGATGATGATTTTAGGGTATGGAAAGTCACACAATCTCAAGGAGATGCCATCCCTTTAGTTTTAAGCTTAATGGGCATGGCGCAAATGTGTGTTCACTGCCCAGCATTGCATGCCCTTTGGATTTTTTGAGACATTGTAGGTATGCTTAATATTGAAATTATATTCATAGTTTTTACTGCATAAAAATAAATGTATAATGTGTAATTCTGCCTTCCCAAAATTTGAGATAAGCTATTGAATATGTGGTCGGTTATGATGCTGCGATGTAAAAAGCTGCTTAGAATTGTGTTGAAGTTTAAGGCTATAAGTTGTGGAGCCAGGTTGTAGGACTTGTTGCACAATCTTGCATTCTTGTACGTTTCCTATGATGAATTAAGCTTAAGTTCATCTTTGTAGTACTTGTACTCAAACCTTAAAGTAGCATTACTCTTTTATTTTACTATATTTGTAGAAGATTTGTTGCTTGTCTTGCACACCAACTTTGTGTAGATGCTTTGATGAACGTATTATTATGTTTGTAACATTAGGAAATATATTGGTTATGATTGTGTAACATTAAGAAATATATTAACCTTTAAAGGCTTGTTTCTTCTCGGTTTGGATTAGATTCCCTTTATCATTAATGTTCTGGGAGGCTGGATTGCTATGTATGTAGAGATTCTTTTTTTCTTCTTGCATATTGCACTCGATACGTTTGGTCGCAGGCTATGGAAACTGTCTCAAATGTGGCATGTCATAGAGATGATAACGAAGATGAAGCCGCTGTTAACAATGGAGGTTCTTCCAAGTTAAGATTATAGATCCGCCTGTAGCAGATGGAAACCCTAATCTGATGGAGAATGAAGGACTCAATCTCGAAGGGTTGTAATACTGTTATCATATGGATTTTTATGTTTTATTTTGTTGTATTATTCTGATTTTGAATATTTTAATATTTGCAAGATATATTCAAAGATGGGGATTACAAGCTCCTTACTATGCATTTGATTTTTCTCTTAGCTTATGATTTATGTCCTCTTGACAAGTACTTACTGC

Network for GWHGAAEX007196

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02201.17	SWIB	301	376	1.20E-10
PF03126.17	Plus-3	436	541	6.10E-21
PF02213.15	GYF	754	795	5.80E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SWI/SNF-BAF60b

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.920
SRP064423	SRR2545915	Juvenile tuber	18.890
SRP108465	SRR5643513	five period of Gastrodia elata	13.240
	SRR5643514	five period of Gastrodia elata	11.810
	SRR5643515	five period of Gastrodia elata	12.470
	SRR5643524	five period of Gastrodia elata	12.490
	SRR5643525	five period of Gastrodia elata	8.340
	SRR5643528	five period of Gastrodia elata	7.460
	SRR5643658	five period of Gastrodia elata	8.820
	SRR5643659	five period of Gastrodia elata	10.370
	SRR5643660	five period of Gastrodia elata	11.540
	SRR5643661	five period of Gastrodia elata	10.800
	SRR5643662	five period of Gastrodia elata	9.720
	SRR5643663	five period of Gastrodia elata	11.330
	SRR5643664	five period of Gastrodia elata	10.620
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.010
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.000
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.100
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	13.980
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	14.860
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	18.950
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	14.150
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	14.710
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.480
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.660
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.050
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.050
SRP279888	Gastro	Gastrodia elata tuber	18.10
	Juven	Juvenile tuber	14.06
	Mother_Gastro	Mother tuber of Gastrodia elata	15.68
	Mother_Juven	Mother tuber of Juvenile	13.90