Gene detail

Detail information of GWHGAAEX007198/evm.TU.scaffold_199.26

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|557694469\|ref\|YP_008797523.1\|	8.00E-40	protein phosphatase [Candidatus Caldiarchaeum subterraneum]
KOG	KOG0374	0	Serine/threonine specific protein phosphatase PP1, catalytic subunit
nr	gi\|720002706\|ref\|XP_010256769.1\|	0	PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Nelumbo nucifera]
Swissprot	tr\|P48489\|PP1_ORYSJ	0	Serine/threonine-protein phosphatase PP1
trEMBL	tr\|Q9SPE2\|Q9SPE2_MALDO	0	Serine/threonine-protein phosphatase {ECO:0000256\|RuleBase:RU004273}
TAIR	AT2G39840	0	type one serine/threonine protein phosphatase 4

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000202	538373	560623	-

Transcript Sequence
>GWHTAAEX007198 CGCGAAGCGGCTTGCAACCCCACTTCTATAGATTTCTGCGTTTCAGTGGGTCAAAGCTTCTGTTTCTTTTTGTTGTTAAATCTTGGAAAAAAAAAAGGAGGTTTCCTTTTAAGACTTTCGATTTATTTACGGCCTCGGTCCTCTCCCCGTCCTGACCGTGTGCTTTCGCTGGCTCCTGTGATTGCTTAGGGTTTTATTTTTGTATTGAGGGCGGTCTGAGGAGCAGTGGAGCGGAGATGGCGGCGGCGCAAGCGCAGGGGATTGACCCGGCGCTTCTGGACGATATCATCACTCGTCTGCTTGAGGTACGATCGGCGAGGCCTGGCAAGCAGGTTCAGCTCTCCGAGGCTGAGATCCGTCAACTCTGTGTAGTCTCTCGGGAGATCTTTCTCCAGCAGCCCAATCTATTAGAACTCGAAGCTCCTATCAAAATATGCGGCGATATCCATGGGCAATACAGTGATCTTTTAAGGCTTTTTGAATATGGAGGTTTTCCTCCCGAGGCCAATTATTTATTTTTAGGTGATTATGTGGATCGGGGGAAACAGAGCTTGGAAACCATATGCCTTCTGCTTGCTTATAAAATTAAATATCCAGAAAACTTTTTTCTACTTAGAGGAAACCATGAATGTGCATCCATAAATAGAATATATGGATTTTATGATGAATGTAAGCGCCGCTTCAATGTGCGGCTATGGAAGGTCTTCACTGATTGTTTCAACTGCCTTCCTATAGCTGCTCTTATAGATGACAAGATATTTTGTATGCATGGTGGCCTCTCTCCTGATTTATCAAATTTGGATCAGATCAAGAGTATTACCCGCCCAACTGATGTTCCAGATACTGGTTTAATATGTGATCTACTCTGGTCAGACCCTGGTAGAGACATTCAAGGATGGGGAATGAATGACCGAGGTGTTTCTTACACTTTTGGTGCTGACAAAGTTTCAGACTTTTTATTAAAACAGGACTTAGACCTTGTTTGTCGAGCCCACCAGGTTGTGGAGGATGGCTATGAATTTTTTGCTGATAGACAGCTTGTAACAATTTTTTCAGCCCCAAACTATTGTGGTGAATTTGATAATGCTGGTGCAATGATGAGTGTTGATGAAACCCTTATGTGCTCTTTTCAAATCCTTAAGCCTGCTGAGAAGAAATCGAAGTTCATGATGCCAACAAAAATATGATATTGATTTTTGCTACAAATATGTTTCTTGAAGGGTTATGTGCTGCGTTGATCCTCCAGGATTCTGCTTGATATCAGCCTGCGGAAAATATTTCGGTCTCTTCAAATTAATGAGCCGAAATTATCTATATATAATGCAATTAGGGAGATTTATTCTTCTTTTTATTTGTTTAATCATTTTATTCTCTACCATAAGCATCAGTAGCTGTATATACAATGACCAGTTTGGAAAAAGGCTTTAGGATACGATCTGTGTTATTGTTTTTCAGTACTTTGCCTGATTTGTTTTGTGGAATTTGATGGTCGCCTCATTGCTGTGATTGGACTTTGTTTCAAAATGCTTGTCACAATGTTGTTATTTTAAAAGGTTGAGATGGAAGTAAGGCTTTTTCAAGGTTAGTATTAGGGCTTCAGCTAATCTTTCTTAATCAAGGATCAATGGCAGCAAGTATCTATGTATTATACTATCTTTTTTTGTTCATTTGGAACAATGATTGTAATTCAAATATTATGCATTTTGCAAATGCTGCTCACGCACACAAATTATTGCTATAC

Network for GWHGAAEX007198

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16891.4	STPPase_N	14	61	1.70E-22
PF00149.27	Metallophos	63	254	6.40E-40

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06269	PPP1C	mRNA surveillance pathway	map03015
		Hippo signaling pathway	map04390
		cAMP signaling pathway	map04024
		cGMP-PKG signaling pathway	map04022
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Cellular senescence	map04218
		Focal adhesion	map04510
		Regulation of actin cytoskeleton	map04810
		Platelet activation	map04611
		Insulin signaling pathway	map04910
		Oxytocin signaling pathway	map04921
		Adrenergic signaling in cardiomyocytes	map04261
		Vascular smooth muscle contraction	map04270
		Dopaminergic synapse	map04728
		Long-term potentiation	map04720
		Inflammatory mediator regulation of TRP channels	map04750

Gene Ontology

GO term	Ontology	Name
GO:0016787	Molecular Function	hydrolase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	53.890
SRP064423	SRR2545915	Juvenile tuber	102.590
SRP108465	SRR5643513	five period of Gastrodia elata	83.360
	SRR5643514	five period of Gastrodia elata	81.610
	SRR5643515	five period of Gastrodia elata	85.850
	SRR5643524	five period of Gastrodia elata	81.470
	SRR5643525	five period of Gastrodia elata	77.950
	SRR5643528	five period of Gastrodia elata	82.660
	SRR5643658	five period of Gastrodia elata	75.250
	SRR5643659	five period of Gastrodia elata	100.450
	SRR5643660	five period of Gastrodia elata	105.560
	SRR5643661	five period of Gastrodia elata	111.440
	SRR5643662	five period of Gastrodia elata	104.220
	SRR5643663	five period of Gastrodia elata	94.870
	SRR5643664	five period of Gastrodia elata	100.060
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	96.670
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	95.860
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	109.170
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	102.050
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	117.120
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	128.980
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	114.020
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	121.480
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	98.880
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	115.070
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	88.800
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	88.800
SRP279888	Gastro	Gastrodia elata tuber	103.15
	Juven	Juvenile tuber	85.13
	Mother_Gastro	Mother tuber of Gastrodia elata	77.10
	Mother_Juven	Mother tuber of Juvenile	60.88