Gene detail

Detail information of GWHGAAEX007201/evm.TU.scaffold_199.29

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|557694900\|ref\|YP_008797954.1\|	5.00E-17	26S proteasome regulatory subunit N11-like protein [Candidatus Caldiarchaeum subterraneum]
KOG	KOG1555	0	26S proteasome regulatory complex, subunit RPN11
nr	gi\|672182506\|ref\|XP_008811504.1\|	0	PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Phoenix dactylifera]
Swissprot	tr\|Q9LT08\|PSDE_ARATH	0	26S proteasome non-ATPase regulatory subunit 14 homolog
trEMBL	tr\|M0TCI7\|M0TCI7_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P33940_001}
TAIR	AT5G23540	0	Mov34/MPN/PAD-1 family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000202	642298	645294	+

Transcript Sequence
>GWHTAAEX007201 ATGGAAAGGCTTCACCGGATCTTCTCTGGGGCGGGAGGGATGGGTCATTCAGCCTCTGATTCTCCACTCCTTGACTCCTCTGAGCAGGTTTACATTTCATCGCTCGCACTCCTCAAGATGCTTAAGCATGGTAGGGCTGGGGTTCCGATGGAAGTGATGGGGCTCATGCTTGGAGAGTTTGTTGATGAATATACTGTGCGTGTCGTGGATGTTTTTGCCATGCCTCAGAGCGGAACGGGAGTTAGTGTTGAGGCTGTAGATCACGTCTTCCAAACCAATATGCTTGATATGCTTAAGCAAACTGGAAGGCCTGAAATGGTAGTGGGATGGTACCATTCCCATCCCGGATTCGGCTGCTGGCTCTCTGGAGTCGATATCAACACCCAGCAGAGCTTTGAAGCACTAAATCCGAGGGCAGTGGCGGTGGTGGTAGATCCTATACAAAGCGTGAAGGGAAAGGTCGTGATTGATGCCTTCCGTTTGATCAACCCTCAAACAATGATGCTCGGCCAGGAACCCCGCCAGACCACCTCCAACCTGGGCCATCTCAACAAACCATCCATCCAGGCGCTAATCCATGGGCTGAACCGGCACTATTACTCGATTGCCATCAACTATCGAAAGAATGAGCTAGAGGAGAAGATGCTCCTGAACTTGCACAAGAAGAAATGGGCGGACGGGTTGACCCTGCGCCCGTTCGATGCCCACTCCAGAACTAACGAGCAGACGGTGCAGGAGATGCTGGGCCTAGCGATCAAATACAACAAGGCGGTGCAGGAGGAGGACGAGCTGTCACCGGAGAAGCTGGCGATCGCCAACGTGGGCCGGCAGGACGCCAAGAAGCACCTGGAGGAGCACGTGTCCAGCCTGATGTCCTCCAACATCGTCCAGACGCTCGGCACCATGCTCGATACTGTCGTCTTCTAG

Network for GWHGAAEX007201

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01398.20	JAB	26	137	2.80E-32
PF13012.5	MitMem_reg	172	286	1.80E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	JAMM

KEGG pathway

KO	Enzyme	pathway	mapID
K03030	PSMD14, RPN11, POH1	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	139.830
SRP064423	SRR2545915	Juvenile tuber	119.020
SRP108465	SRR5643513	five period of Gastrodia elata	169.250
	SRR5643514	five period of Gastrodia elata	156.160
	SRR5643515	five period of Gastrodia elata	156.540
	SRR5643524	five period of Gastrodia elata	145.050
	SRR5643525	five period of Gastrodia elata	140.630
	SRR5643528	five period of Gastrodia elata	154.540
	SRR5643658	five period of Gastrodia elata	118.560
	SRR5643659	five period of Gastrodia elata	200.560
	SRR5643660	five period of Gastrodia elata	223.780
	SRR5643661	five period of Gastrodia elata	214.620
	SRR5643662	five period of Gastrodia elata	220.720
	SRR5643663	five period of Gastrodia elata	198.780
	SRR5643664	five period of Gastrodia elata	199.660
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	194.640
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	122.630
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	205.560
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	203.270
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	197.320
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	195.070
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	215.310
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	187.030
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	258.180
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	257.550
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	244.030
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	244.030
SRP279888	Gastro	Gastrodia elata tuber	254.99
	Juven	Juvenile tuber	254.44
	Mother_Gastro	Mother tuber of Gastrodia elata	133.79
	Mother_Juven	Mother tuber of Juvenile	192.24