Gene detail

Detail information of GWHGAAEX007203/evm.TU.scaffold_199.32

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743761998\|ref\|XP_010905901.1\|	PREDICTED: rop guanine nucleotide exchange factor 7-like [Elaeis guineensis]
Swissprot	tr\|Q9LZN0\|ROGF7_ARATH	Rop guanine nucleotide exchange factor 7
trEMBL	tr\|W1PV89\|W1PV89_AMBTC	Uncharacterized protein {ECO:0000313\|EMBL:ERN12008.1}
TAIR	AT5G02010	RHO guanyl-nucleotide exchange factor 7

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000202	665908	668895	-

Transcript Sequence
>GWHTAAEX007203 ATGGAGATCCCGGTGAAGAAAGATGGCATCGTTTTTAGAGAAGATGAAGAAGAGGAAGAAGAATGCGGCAGGATAAGCAACTGCAGCTCTGAAGCTTCCTCCCCTGAAGATGCTGGAAGTAGCAGCAATGTAGGGTGCATTTCAGATCCTTTGAATCAATGTGTTCAGATGGAAATGATTCCCAATAGCTCAGAAATGGAGCTGATGAAAGAAAGATTTGCAAAACTTTTGCTCGGAGAAGACATGTCTGGCTGCGGAAAGGGGGTATGCACAGCATTGGCGATTTCAAATGGTATCACAAATCTCAGTGCTACAATATTTGGTCAACTATGGAGACTGGAACCAATAGCAGCAGAGAAGAAATCCATGTGGAGAAGAGAGATGCAATGGCTTCTTTGTGTCAGCGATCACATAGTTGAGTTTACACCAACATGGCAAACACTTGCTGATGGGAGCAAGCTGGAGGTTATGACTTGCAGAACTCGTTCCGATCTATACATTAATCTTCCTGCATTGCGAAAGCTCGATAACATGCTATTGGAGCAATTAGATGGTTTCAAAATCCCAGAATTCTGGTATGTTGATCAGGGAATATTGGCCTCAGACACCGATGGCTCGGATTCCTTCCGAAAAGCTGTGCTTCCCCTTCAAGAAGAAAAATGGTGGCTTCCGGTTCCTCATGTTCCTCCCGGCGGTATCCCGGAAAACAGCAGAAAGGACCTTCAGCACAAAAGGGAATGCACAAACCAAATACTCAAAGCTGCAATGGCTGTTAACAGCAATGCCTTGGCTGAAATGGAGATTCCTGAGGCCTACCTTAATTCCCTTCCAAAGACTGGAAGAGCCAGTCTCGGGGATGCAATATATCGTTATATCACCTCAGAAAAATTCTCTCCGGATTGCCTCCTTGATTGTCTCGACCTATCATCCGAGCACCAAGCATTAGAGATTGCGAACCGAGCCGAATCTGCGATGCATATATGGCGTCAAAGAACAGCCAATCGTCACCATATGAACACTCCATGTGCCAAAAACAAGCGTTCATGGGGTCTGATCAAGGAGATGATTGTGGACATGGAGAAAAGAGATCTTCTTGCTGATAGAGCTGAGAGCCTTTTGTTGTGTGTGAAGCAGAAGTTCCCAGGTCTTACCCAAACAACTTTGGACACGAGCAAAATCCAGTTCAACAAGGATATTGGAAAGTCTATCCTAGAAAGTTATTCTAGAGTTCTAGAGAGCCTAGCATCTAACGTGATTGCTCGTATTGACGATCTACTTTATGCCGACAGCATGGCCAAGTGTTCAAGCCAGCTCTCTTCTATTCCTGCAGTCAATATTGTGTCGCAGAAGAGAGTTTCAATTTCTTGCTCAGGCACTGCATATGCAACTCCAAGCCTTTCTCTTGCTCCGCTTGTTAGTCCGATAAAAGAGGAGAGGTTGCCTTTTATCAGTAGAAAGACCATTACGTTTGGCATTGGTGTGAAGAAAGTTTTGGTGGACTATCTTGGCCTCGAAGGCCTAAAACAGTGA

Network for GWHGAAEX007203

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03759.12	PRONE	64	433	4.90E-178

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005089	Molecular Function	Rho guanyl-nucleotide exchange factor activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.280
SRP064423	SRR2545915	Juvenile tuber	5.230
SRP108465	SRR5643513	five period of Gastrodia elata	7.920
	SRR5643514	five period of Gastrodia elata	10.080
	SRR5643515	five period of Gastrodia elata	8.390
	SRR5643524	five period of Gastrodia elata	9.810
	SRR5643525	five period of Gastrodia elata	4.400
	SRR5643528	five period of Gastrodia elata	5.460
	SRR5643658	five period of Gastrodia elata	3.540
	SRR5643659	five period of Gastrodia elata	3.990
	SRR5643660	five period of Gastrodia elata	4.010
	SRR5643661	five period of Gastrodia elata	2.820
	SRR5643662	five period of Gastrodia elata	3.290
	SRR5643663	five period of Gastrodia elata	2.990
	SRR5643664	five period of Gastrodia elata	2.700
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.770
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.900
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.060
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.280
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.470
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	10.960
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.830
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.080
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.550
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.810
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.880
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.880
SRP279888	Gastro	Gastrodia elata tuber	4.04
	Juven	Juvenile tuber	4.41
	Mother_Gastro	Mother tuber of Gastrodia elata	9.47
	Mother_Juven	Mother tuber of Juvenile	6.21