Detail information of GWHGAAEX007209/evm.TU.scaffold_199.39
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1375 | 0 | Beta tubulin |
| nr | gi|255537427|ref|XP_002509780.1| | 0 | tubulin beta chain, putative [Ricinus communis] |
| Swissprot | tr|Q8H7U1|TBB2_ORYSJ | 0 | Tubulin beta-2 chain |
| trEMBL | tr|B9RC96|B9RC96_RICCO | 0 | Tubulin beta chain, putative {ECO:0000313|EMBL:EEF51167.1} |
| TAIR | AT5G62700 | 0 | tubulin beta chain 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000202 | 892396 | 895006 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007209
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00091.24 | Tubulin | 3 | 211 | 8.10E-70 |
| PF03953.16 | Tubulin_C | 261 | 381 | 6.30E-40 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K07375 | TUBB | Phagosome | map04145 |
| Gap junction | map04540 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0007017 | Biological Process | microtubule-based process |
| GO:0005200 | Molecular Function | structural constituent of cytoskeleton |
| GO:0005525 | Molecular Function | GTP binding |
| GO:0003924 | Molecular Function | GTPase activity |
| GO:0005874 | Cellular Component | microtubule |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.540 |
| SRR2545915 | Juvenile tuber | 1.510 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.180 |
| SRR5643514 | five period of Gastrodia elata | 15.400 | |
| SRR5643515 | five period of Gastrodia elata | 7.120 | |
| SRR5643524 | five period of Gastrodia elata | 9.750 | |
| SRR5643525 | five period of Gastrodia elata | 0.470 | |
| SRR5643528 | five period of Gastrodia elata | 0.570 | |
| SRR5643658 | five period of Gastrodia elata | 0.220 | |
| SRR5643659 | five period of Gastrodia elata | 4.960 | |
| SRR5643660 | five period of Gastrodia elata | 6.220 | |
| SRR5643661 | five period of Gastrodia elata | 6.230 | |
| SRR5643662 | five period of Gastrodia elata | 6.250 | |
| SRR5643663 | five period of Gastrodia elata | 4.020 | |
| SRR5643664 | five period of Gastrodia elata | 4.840 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.430 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.340 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.310 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.480 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.040 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.990 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.690 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.910 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 43.980 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.590 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 15.690 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 15.690 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.29 |
| Juven | Juvenile tuber | 4.55 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.88 | |
| Mother_Juven | Mother tuber of Juvenile | 1.45 |