Gene detail

Detail information of GWHGAAEX007210/evm.TU.scaffold_199.41_evm.TU.scaffold_199.40

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|389879399\|ref\|YP_006372964.1\|	4.00E-132	translation initiation factor IF-2 [Tistrella mobilis KA081020-065]
nr	gi\|700255593\|gb\|AIU49415.1\|	0	translation initiation factor 2, partial [Iris japonica]
Swissprot	tr\|Q9XEK9\|IF2C_EUGGR	8.00E-90	Translation initiation factor IF-2, chloroplastic (Fragment)
trEMBL	tr\|A0A097PN07\|A0A097PN07_9ASPA	0	Translation initiation factor 2 {ECO:0000313\|EMBL:AIU49415.1} (Fragment)
TAIR	AT2G37980	0	O-fucosyltransferase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000202	896162	924825	-

Transcript Sequence
>GWHTAAEX007210 ATGTTAATGGCATGGAAGGCAATCGGTGAAAAGGGTCTCCATGCAAGATTTTTAAGAACATTGGCATCTACGAATCAAGGAAGCCGAACATCTTCTCTCTTTGATTTACCCAGGTTGATATCAAATTTTTATTTCAAGGATGATTCTACATTCCCTCTCAATTATAAACTTTTGCAAAACGGTTTACTAATCAGAATATATCATGCAAACAACAATTTGGCTTTGAGAATGAAGGAAGAAGCACCTGGTTTGAAAGTTCCAAGAAAACAGAAACGGATTAGAAGGGAAAATAGAACTGAGGCCCCTGTTGAGGCGCCTTATGTGCCTCCAAAACCAAAATTAACATCAAAAGCTTGTCCCACCAAAGTGATTGATATTTTTGAAGGCATGACTGTTGTTGAACTGGCTAAGAGGACAGGCGTAAATATGAGGTATTTACAAGAGATCATTGTGAATGTTGGCGAGAAAGTTGATACAGAGTTTGATCCTTTAAGCATTGATATTGCCGAGCTAGTTTCCATGGAAGTGGGTGTTAATGTTAGAAGGCTGCACTCTGATGTAGGAGCAGTGCTCCAACCAAGGTCAGCTGTTGTCACAGTTATGGGCCACGTTGATCATGGTAAGACCTCACTTTTAGATGCTTTGCGCCAAACATCTGTTGCAGCCAAGGAAGCTGGTGGGATCACTCAGCACCTAGGTGCATTTGTTGTGGAGATGCCATCGGGAGCGTCAATCACATTTCTTGATACTCCTGGGCACGCAGCATTTAGCGCCATGCGAGCAAGAGGCGCTGCAGTTACCGATATTGTTGTGCTTGTAGTAGCAGCAGATGATGGTGTGATGCCACAAACACTGGAAGCTATGTCCCATGCCCAGGCCGCGAATGTTCCAATTGTGGTAGCCATAAATAAGTGTGATAAACCATCAGCTGATCCTGAGCGGGTCAGAATCCAACTTGGTTCTGAGGGATTGCTGCTTGAGGACCTTGGAGGTGATGTACAAGTTGTCCAGGTTTCTGCTAAAACCAAAGCTGGATTGGATAAATTAGAAGAGGCTCTTCTACTTCAGGCTGAGATCATGGATCTGAAGGCAAGGACTGATGGTCCTTCCCAAGCTTATGTTGTAGAAGCAAGGCTTGACAGAGGACGTGGACCATTAGCTACTTCAATTGTAAAATCTGGAACCTTGGTATGTGGGCAGTACATTGTTGTTGGATCAGAGTGGGGAAGAATAAGGTTCATCAGGGATATGTTGGGGAGACCAATTACATGTGGAAGGCCCTCCATGCCAGTTGAAATTGAAGGATTGAAGGGACTTCCAATGGCTGGTGATGATGTTGTCGTTGTGGATTCTGAGGAGAGATCTAGGATGCTAAGCAATGGAAGAAAGAAGAAACTGGAGAGAGATAGACTTCTGAAGGCCAGTGAAGAGAGGTCTGAAATAGAAAACATCTTAGCTGAGACCCCAACTCCAAGGGTTGAACTGCCTATCCTTGTTAAAGCTGATGTGCAGGGTACTGTGCAAGCAGTCACTGACGCATTGAGAAGTCTAAATAGTGCACAGGTTTTTGTAAATGTTCTTCATGTTGGTGTTGGGCCCATTTCTCAATCTGATGTTGACTTAGCCCAGGCTTGTGGTGCCTGCATTGTTGGTTTCAACATTCGCAGTCCTCCTAGTACTATCACTTTGGCAGCAAATCAAGCGAATATTAAGGTCCCAGCAATTTGGAGAAAACCTTATGATCAAGGCTACGAGCAATGCATTACAAGACCAAAAGATAAAATAAGGCCTGCAACTTCAATCTCCAACGGCTATCTCATAGTACATGCCAATGGCGGCCTGAATCAAATGAGAATAGGGATAAGCGACATGGTGGCGGCGGCGAAGCTGATGGATGCGACGCTCGTTCTTCCCCGATTGGATCACGACTCATTTTGGAATGATCCGAGTAATTTTAAAGATATTTTTGATTCGAAGCACTTCATGAATGCATTGAAGGAGGACATTGAAATTGTAGAATCTCTGCCGCAAAAGTATGCAGGAATCAAGCCATTCATGAAGGAACCAATCTCCTATTCCAAGAGCCCATACTACAGAGGATTTTCCAAAATCTTAAAGAAGCACAAGGTGATTGTCTTCACAAAGACCGACTCCCGAGTCGCGAACAATGGCCTCCCCCCTTCCATTCAGAGGCTCCGATGCCGGGCAAACTATCTAGCCCTGCGGTTCACGCCGCAGATTGAAGAGCTCGGGAAGAAGCTGGTTAATAGGCTAAGAAATGGAACCGATCACTATATTGCTCTTCATTTGAGATATGAGAAGGACATGCTGGCATTCACAGGTTGCAGCCACAACCTGACGAAGAAAGAGGCGGAGGATCTCGAATTAATGCGGTACAGAGTGAGGCATTGGAAGGAGAAGAGGATAGATAGCGCGGAGAGGAGGGCTCAAGGAGGGTGTCCGTTGACCCCTCGAGAGGCTGCTCTTTTCTTGAAAGCCATGGGATACCCTTCAAGCACCAGCATCTGCATTGTTGCCGGAGAAACCTTTGGCCGCAGCAGCATGGATTACTTGAGGAAAGAGTACCCCAACATTCACACGCACAAGAGCCTAGCAACCCCTGAGGAGCTCAGCCCTTTCAAGTCATATCGCAATCGGTTAGCTGCGATCGACTACATTGTTGCTCTAAACAGTGACGTTTTTGTCTACACCTTTGATGGCAATATGGCCAAAGCAGTTCAAGGGCACAGAAGATTTGAAGGGTTTCTTAAGACCATCAGTCCTGATAGGAAGAAGATAGTGGAACTGATAGATAAGCTGGACAAGGGGGACTTAACAAGGGAGAGATTTGAAGATCAAGTAAGAAGGCATCATGCAAGTAGACTTGGAGGGCCATTCGAAAGGCAGGCTGGGCCAACGCCTAAGCTAGAAGAAAGCTTCTTTGCTAATCCTATGCCTGGCTGCTTGTGTGAAAAACTGCATTGATTCATACCCATTAAATGGTCCAATACGAGCTGAAAAAAGTCTGTACAGAGTTCATTTGTCACACAAGCAGATAAGAAGAACCAGGCCTTCGCAGAAGGAACTGATTGCTGCACCTTCTTGGGTGATAAGGAAACGCCATGAAAGAAATTTAATAATGTATAGACATATGAAGATAGAACGGCAGAAAAAGATACAGATAGAATACAATTTATTTTTTAATTTTTT

Network for GWHGAAEX007210

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00009.26	GTP_EFTU	198	354	1.90E-31
PF11987.7	IF-2	485	572	1.00E-21
PF10250.8	O-FucT	605	919	1.10E-70

Protein Sequence

>GWHPAAEX007210
MLMAWKAIGEKGLHARFLRTLASTNQGSRTSSLFDLPRLISNFYFKDDSTFPLNYKLLQNGLLIRIYHANNNLALRMKEEAPGLKVPRKQKRIRRENRTEAPVEAPYVPPKPKLTSKACPTKVIDIFEGMTVVELAKRTGVNMRYLQEIIVNVGEKVDTEFDPLSIDIAELVSMEVGVNVRRLHSDVGAVLQPRSAVVTVMGHVDHGKTSLLDALRQTSVAAKEAGGITQHLGAFVVEMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAQAANVPIVVAINKCDKPSADPERVRIQLGSEGLLLEDLGGDVQVVQVSAKTKAGLDKLEEALLLQAEIMDLKARTDGPSQAYVVEARLDRGRGPLATSIVKSGTLVCGQYIVVGSEWGRIRFIRDMLGRPITCGRPSMPVEIEGLKGLPMAGDDVVVVDSEERSRMLSNGRKKKLERDRLLKASEERSEIENILAETPTPRVELPILVKADVQGTVQAVTDALRSLNSAQVFVNVLHVGVGPISQSDVDLAQACGACIVGFNIRSPPSTITLAANQANIKVPAIWRKPYDQGYEQCITRPKDKIRPATSISNGYLIVHANGGLNQMRIGISDMVAAAKLMDATLVLPRLDHDSFWNDPSNFKDIFDSKHFMNALKEDIEIVESLPQKYAGIKPFMKEPISYSKSPYYRGFSKILKKHKVIVFTKTDSRVANNGLPPSIQRLRCRANYLALRFTPQIEELGKKLVNRLRNGTDHYIALHLRYEKDMLAFTGCSHNLTKKEAEDLELMRYRVRHWKEKRIDSAERRAQGGCPLTPREAALFLKAMGYPSSTSICIVAGETFGRSSMDYLRKEYPNIHTHKSLATPEELSPFKSYRNRLAAIDYIVALNSDVFVYTFDGNMAKAVQGHRRFEGFLKTISPDRKKIVELIDKLDKGDLTRERFEDQVRRHHASRLGGPFERQAGPTPKLEESFFANPMPGCLCEKLH

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006413	Biological Process	translational initiation
GO:0003924	Molecular Function	GTPase activity
GO:0005525	Molecular Function	GTP binding
GO:0003743	Molecular Function	translation initiation factor activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.140
SRP064423	SRR2545915	Juvenile tuber	5.610
SRP108465	SRR5643513	five period of Gastrodia elata	6.610
	SRR5643514	five period of Gastrodia elata	7.890
	SRR5643515	five period of Gastrodia elata	7.890
	SRR5643524	five period of Gastrodia elata	7.570
	SRR5643525	five period of Gastrodia elata	6.720
	SRR5643528	five period of Gastrodia elata	6.210
	SRR5643658	five period of Gastrodia elata	5.920
	SRR5643659	five period of Gastrodia elata	6.480
	SRR5643660	five period of Gastrodia elata	7.870
	SRR5643661	five period of Gastrodia elata	7.710
	SRR5643662	five period of Gastrodia elata	7.320
	SRR5643663	five period of Gastrodia elata	6.310
	SRR5643664	five period of Gastrodia elata	6.720
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.750
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.300
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.620
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.050
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.920
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.190
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.680
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.820
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.560
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.200
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.560
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.560
SRP279888	Gastro	Gastrodia elata tuber	7.41
	Juven	Juvenile tuber	6.48
	Mother_Gastro	Mother tuber of Gastrodia elata	11.02
	Mother_Juven	Mother tuber of Juvenile	7.32