Gene detail

Detail information of GWHGAAEX007214/evm.TU.scaffold_199.45

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2232	Ceramidases
nr	gi\|743796582\|ref\|XP_010924764.1\|	PREDICTED: neutral ceramidase-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q304B9\|NCASE_ARATH	Neutral ceramidase (Precursor)
trEMBL	tr\|W9RXH1\|W9RXH1_9ROSA	Uncharacterized protein {ECO:0000313\|EMBL:EXC01507.1}
TAIR	AT1G07380	Neutral/alkaline non-lysosomal ceramidase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000202	961612	975909	+

Transcript Sequence
>GWHTAAEX007214 GTCGTTCTTGCCTTTTCTCCAAGCCTGTTCAATAAACCATACAAGTTATAACCATCTGCTATAAAGCTGCTCACCCTAACTCCTCTGGCGCAGTCCCTGGCCGAAAGGTCCGAAACCCTCCGCTCTAATACGGGACTCTCGTACTTCATCAGGCCGAATCGCCGACGCTGAGACGCCTTCTTCTCTTCTATTCTCCACACTCGCGCCGACTGTCCGATTCCACGGGCCAGGAGCCCAGGCTTCGATAACCACCCTTGTCTGAGTTTCCGGGAATGGAGGTTTCTTCTCCTATATGTCGGAAGGCTTATGATCTACTTATAGGCATATGCTTTTGCCTGTTTCTTTTGATAGTTTTTCAGAGCTACCATGCAGAAAGCTCTGATTCCACACATTTAATTGGGCTTGGGAGTCATGACATTACAGGTCCTGCAGCTGATGTTAACATGATGGGATATGCTAATATGGAACAGATTGCATCTGGCATTCACTTCAGACTAAGAGCTCGTGCATTTATAATTGCTGAGCTCAGTGGGAATCGAGTGGTGTTCGTAAACCTCGATGCATGTATGGCATCCCAAATTGTCACTATTAAATTGATTGAAAGATTGAAATCAAGGTATGGTGGCTTGTACAATGAAAAAAATGTTGCAATCAGTGGAATTCATACACATGCTGGACCTGGAGGTTATCTTCAATATGTTGTTTATATTGTGACTTCACTAGGATTTGTTCAACAGTCGTTTGATGTTATCGTTGACGGAATTGAGAAAGCCATCATACAAGCCCACGAGAACCTGCGTCCAGGGTCACTATTTATTAACAGAGGTGAGCTTCTTGACGCTAGTATCAACCGCAGTCCAAGTGCATATCTCAATAATCCTTCTGAAGAAAGAAAAAATTACGAGTATAATGTTGACAAGGAAATGACCCTACTAAAGTTTGTAGACAAAGATTGGGGTCCTGTTGGTAGTTTTAATTGGTTTGCTACTCACGGGACGTCCATGAGTCGAACAAATTCACTGATAAGTGGAGACAACAAGGGCGCTGCTGCACGTTTTATGGAGGACTGGTTTGAGAAGGTTCATGGAGAAATAGATGAAATAAAATCTGAAGTTCCAAATAATAATGATCTTGGAAATAACTTTTCCCGTAGATTGTCCGGTTTAACATCCCAGTTAAAAAATGACTATTCCATTTTGAAGCAGCTTGCTATGTCCTTCCCAGCAAAAAATGGCAGCCGAGTACTTGGAACATTTAGCATAACCCGCCGGGTACGAAATACTAAAGCGGGGCATGGAGCAAAATTTGTGTCTGCTTTTTGCCAATCAAATTGTGGGGATGTAAGTCCAAATGTCCTCGGAGCTTTCTGTATAGATACTGGCTTGCCATGCGATTTTAACCACAGCACTTGCAATGGAAAGAATGAATTGTGTTATAGCCGTGGTCCTGGGTATCCAGATGAGTTTGAAAGTACACGTATCATTGGGGATAGGCAATATAAGAAAGCTGTAGACCTTTTCACCACAGCTTCAGAAAAAATTAATGGAAAAATTGATTCTCAACATACTTATTTGGACTTAACAAAACTTGACGTTACTATGCCTTCTATTAACGGACTAAAGGTGGTCAGAACATGCCCTGCTTCTTTGGGTTTTGCTTTTGCAGCTGGAACAACTGATGGTCCAGGCGCTTTTGATTTTAACCAAGGAGACGACAAGGGAAATGCATTTTGGAAACTCGTGAGAAACTTTCTTAAAACACCTAGTAAAGAGCAAAGCGACTGTCAACATCCAAAACCAATTTTACTAGATACCGGTGATATGAAGGAGCCATATGATTGGGCGCCTTCAATTCTTCCAATTCAAATATTAAGAATAGGACAGTTTGTCATCCTTTGCGTGCCTGGAGAGTTCTCTACAATGGCTGGAAGACGACTGCGTGCAGCAGTAAAAACTGTGCTTGCCGGCAGTAGCTCCGGCGATTTCGATAGCAACGTGCATGTTGTAATTGCCGGGCTGACAAATTCATATTCCCAGTATGTGACCACTTTCGAAGAGTATGAGGTCCAAAGATATGAGGGAGCCTCCACACTGTACGGCCCGCACACACTGAGCGCATACATCCAAGAGTTCAAGAAATTGGCGGCGTCCATCGCCGGAGGGCCGAGCGTGTCGCCGGGCCCGCAGCCGCCTGATCTCCTCGCCAAGCAGATAAGCCTGCTCCCTCCCGTCCTCGTGGATTCGAAGCCCGCCGGCGTCAACTTCGGGGACGTCAAATCGGACGTCCGGCAGAATTCTACTTTTGCCAGGGGCGATCTTGTCGTGGCCACGTTCTGGTCGTCCTGCCCCAGGAACGATCTGTTGACAGAGGGCACGTTTGCGCTCGTGGAGATCTTGAGCGTCACGGGTGCGTGGACTCCCGCCTACGACGACGACGATTTCTGCGTCAGATTCAGGTGGTGGAGGCCGTGGAAGCTCAGCTCCCGCAGCTACGCCATCGTAGAGTGGAGAGTTCCGGAGGACACAGTTCCGGGAGTCTACAGAATAAGCCATTTTGGGGCTGCGAGGAGGCTCTTCGGATCCATCAGCCATTTCGCCGGCGCTTCCAGTGCTTTTGTTGTGATCTAGTGAGGGATAATTGCTTGCTTGGTATCTAGATTTTTTGTATATGCAAATCTAGTGCTCTCAGATCTCGATGTTTACAAATCAAACGCCCAATTGTATCCGATTAAAGTTATATCTAATCAATAGAGAGTAGTTTTGTTGGCAAAAGGTTTCTTTAATGTTCGGTTTACGTTTTTTATGAATTATATGATTAAAAAATTTCTAACCTGAGCTGCTAAAGCTTTCGGATGTAATTCTCTATTAATGACTTCAAAGAACAATCAGGAAAAGGCTATCTTTTTATTTTTCTCACTAAAAATTGATGGTT

Network for GWHGAAEX007214

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04734.12	Ceramidase_alk	41	618	5.00E-233
PF17048.4	Ceramidse_alk_C	620	783	5.20E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12349	ASAH2	Metabolic pathways	map01100
		Sphingolipid metabolism	map00600
		Sphingolipid signaling pathway	map04071

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	38.300
SRP064423	SRR2545915	Juvenile tuber	40.550
SRP108465	SRR5643513	five period of Gastrodia elata	33.370
	SRR5643514	five period of Gastrodia elata	28.820
	SRR5643515	five period of Gastrodia elata	28.790
	SRR5643524	five period of Gastrodia elata	28.580
	SRR5643525	five period of Gastrodia elata	41.520
	SRR5643528	five period of Gastrodia elata	39.130
	SRR5643658	five period of Gastrodia elata	35.800
	SRR5643659	five period of Gastrodia elata	44.080
	SRR5643660	five period of Gastrodia elata	48.900
	SRR5643661	five period of Gastrodia elata	40.730
	SRR5643662	five period of Gastrodia elata	42.810
	SRR5643663	five period of Gastrodia elata	50.690
	SRR5643664	five period of Gastrodia elata	46.950
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	34.750
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	35.910
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	30.750
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	46.630
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	39.310
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	40.340
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	32.140
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	31.490
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	30.330
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	30.560
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	26.200
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	26.200
SRP279888	Gastro	Gastrodia elata tuber	59.53
	Juven	Juvenile tuber	64.68
	Mother_Gastro	Mother tuber of Gastrodia elata	42.84
	Mother_Juven	Mother tuber of Juvenile	51.14