Detail information of GWHGAAEX007216/evm.TU.scaffold_199.47


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|347538586|ref|YP_004846010.1|2.00E-2030S ribosomal protein S6 [Pseudogulbenkiania sp. NH8B]
nrgi|743768704|ref|XP_010914628.1|3.53E-105PREDICTED: uncharacterized protein LOC105039976 [Elaeis guineensis]
trEMBLtr|I1IHG7|I1IHG7_BRADI1.00E-102Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI4G04560.1}
TAIRAT3G171708.00E-84Translation elongation factor EF1B/ribosomal protein S6 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000020210213261026155-
Transcript Sequence

Network for GWHGAAEX007216

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01250.16Ribosomal_S61232115.70E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0019843Molecular FunctionrRNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.900
SRR2545915Juvenile tuber14.840
SRP108465SRR5643513five period of Gastrodia elata10.450
SRR5643514five period of Gastrodia elata10.070
SRR5643515five period of Gastrodia elata8.690
SRR5643524five period of Gastrodia elata10.320
SRR5643525five period of Gastrodia elata10.170
SRR5643528five period of Gastrodia elata10.020
SRR5643658five period of Gastrodia elata9.670
SRR5643659five period of Gastrodia elata14.110
SRR5643660five period of Gastrodia elata13.590
SRR5643661five period of Gastrodia elata15.730
SRR5643662five period of Gastrodia elata17.160
SRR5643663five period of Gastrodia elata17.820
SRR5643664five period of Gastrodia elata15.160
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_18.650
SRR6049655Rhizomagastrodiae_C368-T10_good_19.340
SRR6049656Rhizomagastrodiae_C368-T07_good_110.880
SRR6049657Rhizomagastrodiae_C368-T07_good_110.180
SRR6049658Rhizomagastrodiae_C368-T04_good_110.880
SRR6049659Rhizomagastrodiae_C368-T04_good_110.490
SRR6049660Rhizomagastrodiae_C368-T01_good_19.260
SRR6049661Rhizomagastrodiae_C368-T04_good_110.360
SRR6049662Rhizomagastrodiae_C368-T01_good_111.270
SRR6049663Rhizomagastrodiae_C368-T01_good_17.710
SRR6049664Rhizomagastrodiae_C368-T10_good_110.160
SRR6049665Rhizomagastrodiae_C368-T10_good_110.160
SRP279888GastroGastrodia elata tuber 16.70
JuvenJuvenile tuber10.84
Mother_GastroMother tuber of Gastrodia elata 11.53
Mother_JuvenMother tuber of Juvenile 9.93