Detail information of GWHGAAEX007222/evm.TU.scaffold_199.53


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|256423338|ref|YP_003123991.1|1.00E-16RNP-1 like RNA-binding protein [Chitinophaga pinensis DSM 2588]
KOGKOG46614.00E-40Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B)
nrgi|224106315|ref|XP_002314126.1|2.28E-54transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
Swissprottr|Q84TH4|SR45A_ARATH4.00E-42Serine/arginine-rich splicing factor SR45a
trEMBLtr|B9HP82|B9HP82_POPTR8.00E-55Transformer serine/arginine-rich ribonucleoprotein {ECO:0000313|EMBL:EEE88081.1}
TAIRAT1G073504.00E-40RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000020210789151082931+
Transcript Sequence

Network for GWHGAAEX007222

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_1551245.10E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms52.530
SRR2545915Juvenile tuber54.790
SRP108465SRR5643513five period of Gastrodia elata19.310
SRR5643514five period of Gastrodia elata12.420
SRR5643515five period of Gastrodia elata13.920
SRR5643524five period of Gastrodia elata13.000
SRR5643525five period of Gastrodia elata18.690
SRR5643528five period of Gastrodia elata19.340
SRR5643658five period of Gastrodia elata14.410
SRR5643659five period of Gastrodia elata19.430
SRR5643660five period of Gastrodia elata23.420
SRR5643661five period of Gastrodia elata19.020
SRR5643662five period of Gastrodia elata16.560
SRR5643663five period of Gastrodia elata18.970
SRR5643664five period of Gastrodia elata25.460
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_122.580
SRR6049655Rhizomagastrodiae_C368-T10_good_123.350
SRR6049656Rhizomagastrodiae_C368-T07_good_118.120
SRR6049657Rhizomagastrodiae_C368-T07_good_125.030
SRR6049658Rhizomagastrodiae_C368-T04_good_121.410
SRR6049659Rhizomagastrodiae_C368-T04_good_119.140
SRR6049660Rhizomagastrodiae_C368-T01_good_122.000
SRR6049661Rhizomagastrodiae_C368-T04_good_119.030
SRR6049662Rhizomagastrodiae_C368-T01_good_119.460
SRR6049663Rhizomagastrodiae_C368-T01_good_119.810
SRR6049664Rhizomagastrodiae_C368-T10_good_117.490
SRR6049665Rhizomagastrodiae_C368-T10_good_117.490
SRP279888GastroGastrodia elata tuber 13.34
JuvenJuvenile tuber30.01
Mother_GastroMother tuber of Gastrodia elata 40.81
Mother_JuvenMother tuber of Juvenile 27.19