Gene detail

Detail information of GWHGAAEX007228/evm.TU.scaffold_199.59

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4197	0	FOG: PPR repeat
nr	gi\|672189725\|ref\|XP_008775062.1\|	0	PREDICTED: pentatricopeptide repeat-containing protein At3g09060 [Phoenix dactylifera]
Swissprot	tr\|Q9SS81\|PP221_ARATH	0	Pentatricopeptide repeat-containing protein At3g09060
trEMBL	tr\|A0A077RYF2\|A0A077RYF2_WHEAT	0	Chromosome 3B, genomic scaffold, cultivar Chinese Spring {ECO:0000313\|EMBL:CDM83641.1}
trEMBL	tr\|A0A077RYF2\|A0A077RYF2_WHEAT	2.00E-65	Chromosome 3B, genomic scaffold, cultivar Chinese Spring {ECO:0000313\|EMBL:CDM83641.1}
trEMBL	tr\|A0A077RYF2\|A0A077RYF2_WHEAT	4.00E-61	Chromosome 3B, genomic scaffold, cultivar Chinese Spring {ECO:0000313\|EMBL:CDM83641.1}
TAIR	AT3G09060	0	Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000202	1143360	1145710	+

Transcript Sequence
>GWHTAAEX007228 GCATTTTCTTATATCAAAGCCTTACCTCCGATTAGCAAATGAGAGATGAGCAGCGAAGTTCCTCGCATCCACCCTTTGCTGCAGCTCATCTCCAGTGAAAGAAATCCGGCAACTGCCTTATCTCACCTGGAAACCCTCACTTGTTCTCGCCCATGGTACTCCCCGCCAGCGCCCCTTCTCTTCTCTCTCATCCGACGCGTTTCCTCCGCCGCCCCAACCCTCCTCTCACGTCTCCTCCGCCTCCTCTCGTCCCTGCCAAATCGCCACCGCTTCTCAGAGGATGTCGCCCTCGTCGCCCTCAAAGGGCTCTCCCGCGCTCACATGCCCGAAGAAGCCCTCCGCGTCTTCAAGTCGCTGTCTTTCGTCTTCGGATGCCGGCCCGGCGTCCGCTCGCACAATGCTCTCCTCGACGCCTTCGTTCGCTCTCACCAGTGGGATAAAGCCGAGTCTTTTTTCCATTTCTTCTACCGCCAAGCCCATGCTTCCCCCAACATCGAGACCTACAACATCCTCATCAGAGGACTCTGCGCTCAGAATAAGATCGATCGAGCTCTGCAGATGGTGGAAACCATCCGGCTAGACTCCGGGCTGGAGCCCAATCGGGTAACTTACAGCACTTTGATGTTTGGGTTGATACAAGCTGGCAACTTGGACGGCGCACTCAATGTGTTTGATGAAATGCTTGACAGGAAAGTGGATCCTGACACCGTTTGCTACAACGTTCTGATTGATGGTTTTATGAAGAATGGGGATTTTGCAAAGGGGATGAAGATTTGGGAGACGTTGCTGAGGGACTGCGCCGTTTCCCCCAATGTTGCGACTTACAATGCTATGCTGAACGGCCTGTGCAAAGTTCACAAGTTTGATGAGGCTATGAGGATTCTCAACCGTATGCTGAGCAATGGTCACCGCATGGATTCATTTACTTATGCGATTTTAATACATGGAATGTGCGAGATGGGGAATGTGGATGGAGCGTCGCAGGTTTATGCGGAGATGATCAAGAGAGGGTTTCATCTCGATGTCGTTACCTCCAATTCTTTGCTCAATGGTTTCTGCAAAGCTGGCAGGATTGATGAATCTTTGAGCCTCTGGTCTTCGATGCTAAGGACAAGGAATCTTAATTTTGTCAGTTATAACATTCTTATCAAAGCCCTGTTTGAGAACGGTGAGGTCACCAAAGCTATTTCTGTTTGGGAGCATTTGAAAGCTGACAGTGAATTTCAGCCAGATGCGGGGACTTATGGTGTTTTAATTCATGGATTATGTCAGAGCGGGTACCTTGGCAAGGCTCTGGAAGTTCTGAATGAGGCAGAGCGAAATGGCAATAAAAAACCGGATGTTTTTGCATATTCCTCAATGATTAATGGACTGTGCAAGAGTGATAGGTTAGATGAAGCGGTTACCATTTTCGATCGGATGGTTAGACAAGGCTATAAGCCGAATTCTCACATTTATAATGCACTGATCAATGGCTTTTGTCGGGCATCTAAGATGAAGCATGCTATTGATGTTTTCGATGAAATGATCAGCATTGGTTGCTCCCCTACTATTGTGACCTATAACATACTGATAGATGGATTTTGTAAGGCGGAAAGATTCCAGGAAGCTTCGAGTTTTGCCAAGGAAATGGTGGAAAAAGGGTTCAAAGCTGATGCTAGGACTTTCAGTTCAATAATCGATGGTCTCTGCCGGGATAAAAAGATTGACCTTGCTCTTCAAGTTTGGAACCTAGTTCTTTCTTTGGGATTTGGAGCTGATGTTGTTCTGCATAACGTTCTCATTCGCGGCCTCTGTGCTGCGGGAAAGGTGGAAGCAGCGTTGCATATTTGTTCTGGCATGAAACATAAGAACTGCTCTCCAAACCTTGTGACATTAAACACTCTAATGGATGGACTCTATGAAGCTGGTGACTGTGAAAAAGCATCAGAATTGTGGAACAAGATTTTAGAGGCAGGGTTGCAGCCAGATATCGTTTCTTATAATATAGCGTTTAAAGGTCTTTGTTTGCATAAGCAGACGATGGATGCACTTAAACTTTTTGATGATGCCATGTGCTGTGGCATTGTCCCAACCTCCATTACTTGGAACATACTTGTTAGAGCAGTAGTGAGTAGTGCTCTACAAACATGATTCAGTGATATTTTTTCTTTCAAAGTTAATAATTATTTCCTGTCACTGCATTTTGAGCGTTTCTAGTATGTGCCACGCCTCTTATGAATTTAACTTTTTTATTGTGTGAGTGTATGCGACAATAGGCATACTGTAACTCTCGTAAGATTGCTATAGATACCTGGCAGTCTGTCCATTTTGTACATGGAGGAACCAGAAGAGTTTTTTTGGTTATCGAA

Network for GWHGAAEX007228

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01535.19	PPR	116	138	0.21
PF12854.6	PPR_1	147	174	8.20E-08
PF13041.5	PPR_2	184	233	1.70E-13
PF13041.5	PPR_2	255	303	1.70E-16
PF12854.6	PPR_1	321	353	9.70E-08
PF01535.19	PPR	362	388	0.0012
PF13041.5	PPR_2	395	445	1.70E-11
PF13041.5	PPR_2	466	515	4.70E-19
PF12854.6	PPR_1	532	562	1.60E-06
PF01535.19	PPR	575	604	0.0019
PF13041.5	PPR_2	606	654	7.60E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.560
SRP064423	SRR2545915	Juvenile tuber	4.010
SRP108465	SRR5643513	five period of Gastrodia elata	4.240
	SRR5643514	five period of Gastrodia elata	2.480
	SRR5643515	five period of Gastrodia elata	2.520
	SRR5643524	five period of Gastrodia elata	2.730
	SRR5643525	five period of Gastrodia elata	1.790
	SRR5643528	five period of Gastrodia elata	1.090
	SRR5643658	five period of Gastrodia elata	0.770
	SRR5643659	five period of Gastrodia elata	4.470
	SRR5643660	five period of Gastrodia elata	5.100
	SRR5643661	five period of Gastrodia elata	5.440
	SRR5643662	five period of Gastrodia elata	5.170
	SRR5643663	five period of Gastrodia elata	5.590
	SRR5643664	five period of Gastrodia elata	6.690
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.000
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.460
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.290
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.050
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.480
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.780
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.200
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.810
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.330
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.890
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.850
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.850
SRP279888	Gastro	Gastrodia elata tuber	7.18
	Juven	Juvenile tuber	5.03
	Mother_Gastro	Mother tuber of Gastrodia elata	1.43
	Mother_Juven	Mother tuber of Juvenile	1.77