Detail information of GWHGAAEX007229/evm.TU.scaffold_199.60


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|427734864|ref|YP_007054408.1|9.00E-170membrane protease FtsH catalytic subunit [Rivularia sp. PCC 7116]
KOGKOG07310AAA+-type ATPase containing the peptidase M41 domain
nrgi|743790211|ref|XP_010923113.1|0PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic isoform X1 [Elaeis guineensis]
Swissprottr|Q6H6R9|FTSH7_ORYSJ0ATP-dependent zinc metalloprotease FTSH 7, chloroplastic (Precursor)
trEMBLtr|W1PR52|W1PR52_AMBTC0Uncharacterized protein {ECO:0000313|EMBL:ERN09700.1}
TAIRAT5G588700FTSH protease 9

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000020211607521189913+
Transcript Sequence

Network for GWHGAAEX007229

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06480.14FtsH_ext1672873.90E-06
PF00004.28AAA3865196.90E-43
PF01434.17Peptidase_M415857988.10E-43
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006508Biological Processproteolysis
GO:0005524Molecular FunctionATP binding
GO:0004222Molecular Functionmetalloendopeptidase activity
GO:0008270Molecular Functionzinc ion binding
GO:0016020Cellular Componentmembrane
GO:0016021Cellular Componentintegral component of membrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms53.670
SRR2545915Juvenile tuber34.340
SRP108465SRR5643513five period of Gastrodia elata28.100
SRR5643514five period of Gastrodia elata26.220
SRR5643515five period of Gastrodia elata27.050
SRR5643524five period of Gastrodia elata26.080
SRR5643525five period of Gastrodia elata40.800
SRR5643528five period of Gastrodia elata36.320
SRR5643658five period of Gastrodia elata50.330
SRR5643659five period of Gastrodia elata26.200
SRR5643660five period of Gastrodia elata29.650
SRR5643661five period of Gastrodia elata25.280
SRR5643662five period of Gastrodia elata27.970
SRR5643663five period of Gastrodia elata27.720
SRR5643664five period of Gastrodia elata34.590
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_134.110
SRR6049655Rhizomagastrodiae_C368-T10_good_122.030
SRR6049656Rhizomagastrodiae_C368-T07_good_128.360
SRR6049657Rhizomagastrodiae_C368-T07_good_146.420
SRR6049658Rhizomagastrodiae_C368-T04_good_145.830
SRR6049659Rhizomagastrodiae_C368-T04_good_156.730
SRR6049660Rhizomagastrodiae_C368-T01_good_142.070
SRR6049661Rhizomagastrodiae_C368-T04_good_143.590
SRR6049662Rhizomagastrodiae_C368-T01_good_125.520
SRR6049663Rhizomagastrodiae_C368-T01_good_130.480
SRR6049664Rhizomagastrodiae_C368-T10_good_125.560
SRR6049665Rhizomagastrodiae_C368-T10_good_125.560
SRP279888GastroGastrodia elata tuber 36.90
JuvenJuvenile tuber37.82
Mother_GastroMother tuber of Gastrodia elata 37.26
Mother_JuvenMother tuber of Juvenile 45.08