Gene detail

Detail information of GWHGAAEX007235/evm.TU.scaffold_199.69

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2196	2.00E-23	Nuclear porin
nr	gi\|596051581\|ref\|XP_007220636.1\|	1.33E-103	hypothetical protein PRUPE_ppa002546mg [Prunus persica]
Swissprot	tr\|Q8L7F7\|NUP62_ARATH	5.00E-98	Nuclear pore complex protein NUP62 {ECO:0000303\|PubMed:21189294}
trEMBL	tr\|M5XS35\|M5XS35_PRUPE	5.00E-104	Uncharacterized protein {ECO:0000313\|EMBL:EMJ21835.1}
TAIR	HS7705355	2.00E-23	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000202	1288060	1339211	-

Transcript Sequence
>GWHTAAEX007235 CGAGCATTTTATTGTAGTAACGAAAAGTGTCGCACCACCGTCGGACTCAGGTACAAAGAGAGAGAGGAAAAGCGGGAGCAGTTCATCTCGAATTTGAATGGCGTCGTCTTTCTCCTTCAATCCCTCCACCAGCACCACCACCTCCTCCTCATCCTCCTCATCGCAGTCTTCTGGTTTCTCATTTCCTTTCACTCCCAGCTCCCCAGCCCCCTCATCTTTCTCACCCTCCTCCATCTTTTCGCTTTTGCCCACAGCCGCTTCCTCTGTCAATCCAACAACATCGTTCTCAGTCGGCACTGCTGCCACAGTGGCCTCTCAGCCCACCCTAATCGATTCATCTCCTTTCACGAATTCTTTATCTCCAAACCCTAACCCTTCTCTGCCTAACACTAGCAAATTGTTTGCCGCATCATCTGCTGCCAAACCCTTCTCATTCTCCTTAAATCCGGCCTCTGCTCAGGCTACAGCCACCACCATAGCTAGTTCATCAGTTCCCTCCACATCCACCTTCGGCTTTTCTTCTAGTTCCACGTCGTTCTCTCTTCCCGCCATCTCGTTTGGCAGCGTAGGCTTGTCATCAACAGCGACCACGCCATTATTCCCTTCTGTCACCCCATCTTCTTCTGTCACCTCATCGAGGACGACTACGGGAAATCTCTTCTCCAATGCGCTATCGTCATCTTCAACTCCTTCGTTCTCATTTGGAAATTCCCTCTCTTCCTCCAGCTCTTCCGGTGATGTCGCATCTCTCCATAACACTTCGTCATCGATTCCTGCGAGTCACACTGTCTCTCCCTCTGCGGTAACCTTGCAACCTACCGTTTCATTTGGAAGTTCTGCTTCTCAAACTTCCTTTGGCTTCAATAGTATGACTTCCAAAGCTACTGCTACCTCTTTAGAAACTCCTTTTTCAAGCACTGGGGTTGCCAAGCCTTTCTCCTCTTCTTTCAGTTCTTCTTTGGCACCATTGACATCATTTACAGAAGATACTTCCATTGTTAATGCAACTGCTTCTGCTACTTTGGCTTCATCCAATTTGTTTTCTTCTCATGCTTCTGCTGCTGTTGCACCTACTTCATCGGTTCCTCTATTTGGAACTCCCGCTTCTTCAACAATGCCAATATCTTCTACAGCAGTAACAACTGCAAGTTCAGCTGGCATGGCTGCATCCACAAGTTCTTTTCCAAGCCCAAACTTGCCATCGACTTTTGGTTCTGCTTCAGCAGCTGTTAACATAGCTGGTTCCAGTTCCACTGCAACACAGGCATTGCCTTCAGTAACTGGTGCTGTTGGTTCAGTTTTGACTACATCTCTTGCGCCAAGGCTACCCTCTGAAGTTTATGGAAAGACTGTTGAGGAGATTATTAAGGAATGGAATTCTGAACTTCAAGAACGAACTGCTAAATTTCGGAAGCATGCTGCAGTAGTCTCTGAGTGGGATAAAAGGATCTTGCATAACCGTGATGTTCTTATCAAGCTTGAGGCAGAGGTGGCCAAAGTTGTTGAGACTCAAGCTAGCTTGGTGAGACAACTTGAGTTAATTGAGACGCATCAACAAGAGGTTGACAAGGCTTTGCAAAGCATGGAGACAGCAGCTGAGCGTATATACAAAGAAGAGCAGGGCTTCCTTCTTGAAGATGACGCTACTTTTACAAGAGATGCAATGTTTGAGAAGGCGGAGTTTATTGAAAGGGAACTGGAGCGAATGTCTGAGCAAGTTAAATCTATAATCCAAACGTTTAATTCAATGCAGGGAAGTGACATGGATTTGAATGATAATTTGTCCCCTATTGATGCTGCTGTTCACATATTGAATAACCAGCTCAGTTCCTTGGTGTGGATTGATGAAAAGGCAAATGAATTTTCTGCCAGGCTTCAAAAACTAGCCCATCGCAGCACCCCACCCCGTGATTCGTCAGCCTCAATGTATTGGCTAAACTGATTAGTTATCAAAGATTCTAAACTATTTGATGTTGTGGAGCGTTCAGAGGATCTGCACTAGGCGGAGGAGCGTGTTGCTGAAGGCTTTAGGTCCTTAGCTTTATTTCTGTTTCTGCTTGTAAGGCTGAGAGCTTTTATTTTCTGTTTTAACTAAACTCTTTCATGTTTTGTAATAATACAATTTTATTTTTTGTTACTGTACTTATTTAGAGTTATATGTTTTACTTATCATATATGATGGAATGGATGTTTACATTTTGCTTTCGCA

Network for GWHGAAEX007235

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05064.12	Nsp1_C	405	506	2.20E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14306	NUP62, NSP1	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.470
SRP064423	SRR2545915	Juvenile tuber	6.730
SRP108465	SRR5643513	five period of Gastrodia elata	9.730
	SRR5643514	five period of Gastrodia elata	10.380
	SRR5643515	five period of Gastrodia elata	9.400
	SRR5643524	five period of Gastrodia elata	11.310
	SRR5643525	five period of Gastrodia elata	6.740
	SRR5643528	five period of Gastrodia elata	10.840
	SRR5643658	five period of Gastrodia elata	5.320
	SRR5643659	five period of Gastrodia elata	11.490
	SRR5643660	five period of Gastrodia elata	11.080
	SRR5643661	five period of Gastrodia elata	10.910
	SRR5643662	five period of Gastrodia elata	8.800
	SRR5643663	five period of Gastrodia elata	8.030
	SRR5643664	five period of Gastrodia elata	8.280
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.070
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	17.790
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.750
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.820
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.130
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.390
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.840
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.760
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	16.590
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	13.340
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.000
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.000
SRP279888	Gastro	Gastrodia elata tuber	7.85
	Juven	Juvenile tuber	10.65
	Mother_Gastro	Mother tuber of Gastrodia elata	9.55
	Mother_Juven	Mother tuber of Juvenile	10.15