Detail information of GWHGAAEX007236/evm.TU.scaffold_199.70
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|427718419|ref|YP_007066413.1| | 2.00E-78 | undecaprenyl pyrophosphate synthetase [Calothrix sp. PCC 7507] |
| KOG | KOG1602 | 2.00E-96 | Cis-prenyltransferase |
| nr | gi|695025726|ref|XP_009400126.1| | 3.44E-118 | PREDICTED: dehydrodolichyl diphosphate synthase 2-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q56Y11|DDPS2_ARATH | 7.00E-97 | Dehydrodolichyl diphosphate synthase 2 |
| trEMBL | tr|M0SW53|M0SW53_MUSAM | 6.00E-111 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P06240_001} |
| TAIR | AT5G58770 | 2.00E-96 | Undecaprenyl pyrophosphate synthetase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000202 | 1342431 | 1347456 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007236
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01255.18 | Prenyltransf | 87 | 311 | 4.90E-75 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K11778 | DHDDS, RER2, SRT1 | Biosynthesis of secondary metabolites | map01110 |
| Terpenoid backbone biosynthesis | map00900 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016765 | Molecular Function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.550 |
| SRR2545915 | Juvenile tuber | 6.630 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.790 |
| SRR5643514 | five period of Gastrodia elata | 12.690 | |
| SRR5643515 | five period of Gastrodia elata | 11.440 | |
| SRR5643524 | five period of Gastrodia elata | 12.620 | |
| SRR5643525 | five period of Gastrodia elata | 12.800 | |
| SRR5643528 | five period of Gastrodia elata | 13.250 | |
| SRR5643658 | five period of Gastrodia elata | 10.340 | |
| SRR5643659 | five period of Gastrodia elata | 14.420 | |
| SRR5643660 | five period of Gastrodia elata | 12.650 | |
| SRR5643661 | five period of Gastrodia elata | 12.540 | |
| SRR5643662 | five period of Gastrodia elata | 13.540 | |
| SRR5643663 | five period of Gastrodia elata | 13.880 | |
| SRR5643664 | five period of Gastrodia elata | 10.190 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.560 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.330 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.650 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.670 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.340 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.070 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.220 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.090 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.200 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.590 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.840 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.840 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.83 |
| Juven | Juvenile tuber | 11.84 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.51 | |
| Mother_Juven | Mother tuber of Juvenile | 10.75 |