Gene detail

Detail information of GWHGAAEX007246/evm.TU.scaffold_2.9

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0656	1.00E-42	G1/S-specific cyclin D
nr	gi\|695023048\|ref\|XP_009398673.1\|	3.43E-67	PREDICTED: cyclin-D3-2-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9SN11\|CCD33_ARATH	4.00E-43	Cyclin-D3-3
trEMBL	tr\|M0SQI5\|M0SQI5_MUSAM	2.00E-67	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P20220_001}
TAIR	AT3G50070	1.00E-42	CYCLIN D3;3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	269727	272231	-

Transcript Sequence
>GWHTAAEX007246 CCTCTTTCTAAAATTTATACCGAAGGATAAATAATTATGGGCGGTAATAAAAACAAGCAAAAAAAAAACGACAAAAATGGCAGAGGCCCATTAAAACCCCAGCCCTTTCCATCTTAAGCCTCTATGGTTGGACCCTCGCCGTCCTCCCCGAGGCCGAAAAGACATCAAAAGCAAGCCGAGACCTAAAGCTACCGCCGAACTCTCGATGCGATTGAACGAAGCAACGATCGCCAAAAATATATAATAAAATTCTTTAGGCAGAAGAAGAGATTCTCCATTCTTACGATGGATTACGATCCTCTCTTCTGCCGAGAAAATCATTTCGAGGAAGAAGAAGAAGAAGAAATAGAGGAGGGCGAGGAATGGGTCTCCTCTCTCCTTGCCAAGAGCAGGCCGGATCTCTGGGGATTTACCTCCGGAGAAATCTACACCGTTGAAGCCAGAAGCAGTGCTGTTCAATGGATTGCGAGAGCGAGCGCTGAGCACGGATTCTCCGTCCAAACCGCGCTGCTCGCCGTCAACTATCTCGACCGCTGCTTCGTTTCATCGGACGGCGGATGCTTGCGTCTGCAGGAAGACAAACCGTGGATGAGCCGTCTGGCTGCGGTGGCCTGCCTTTCGATTGCGGCCAAGATCGAGGAGACACGTGTTCCTCTGCTTCTCGACCTCCATTGGCCCTCTCCGGCGCTGGGGTTCGTCTTCGATAGCAGGACCATTCGCCGAATGGAGCTCCTCGTTCTGTCCGCGCTCGACTGGAGAATGAATCCCGTCACCCCCCTTTCCCTCGCCCGCGCTCTTTTCCGCAAGGTTCCAGTCACCGCCGCGCTCTGCGAGGCCGCCTTGCTGGCTGCCGCCGCTGATTTTTGCTGGGTCCAGCATCCGCCGTCGGTTTGGGCAGCAGCGGCGCTGATCTACGCTGCAAGACCACCTGAAATTGACGCTCCGGTGAAGCTTCTCAACGTATCGAAGGAAAGAGCGTGCGAAGCTTATCGCCTCATTCTGAAGCTCTGTGGCAGCAGCGATTTCTTCAGGTGCAATAAAAGGAAGCTGTTTAATTGCCGATCGCCCGAGAGCCCGAATTGTCTGATCGGATCTTGCTTCACCTGCGAGAGTTCTTCGAGCGGCGAAATGCCTCCGCTGAAGAAATCCAACACAGATCAAATTTGTGATAATGGTGAAGCAAGGGGCTAATGATCTAGAAGATCATAAAGTCGCCTACGCTTGAATCAGGCTTCTCGATTGGGAAATGAGAGCAGAAGAGATGATTTTAATGCGATTTCTATTTTCCTGATTCTTGCTTTGAATGCGCATATAGCCACAAAGGTCTCTTAATTTGCACGTTGTTGATTCGCTATGGCATAAATGCTTTGTGGGTGAGAATGAAGATCATAGAGACTGCGAGCGACAGAGAGAGGGACAGGCAGAAAGAGAGTGATATAGTACCGTTCTGTTCATTAATTGGCATATCATTTAACGGTGATTATTTCTTCTGCCTTGTGCAGTATGATTAGAGTTTGATATACTTTCTCCGAATTCCTCATATTGTCTGCCTCCATTTGCGCTAATAAAGTAATGAATATGAATGATGTTCATATTTTAGTTGCTAAGATATTGAATTTATCTCATTAATGTTCAAAGTGTTGATTTGATAGATTAAGTTTCTCTTATAATCATTAAACACCTCCTTCTTCACCTTCCCCTTTTATCCAAGTCAACCTTATTCGCTATATTCTTCGCCTCACTTGCCAGTGACGGTGGAGCTTTGAAGCTATTTGGGAGCAGAGGATTTTATTATGATATTCTTAGATCTTTCATTGATTGACTGTGCTTTCCA

Network for GWHGAAEX007246

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00134.22	Cyclin_N	48	160	2.60E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14505	CYCD3	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.120
SRP064423	SRR2545915	Juvenile tuber	3.320
SRP108465	SRR5643513	five period of Gastrodia elata	11.860
	SRR5643514	five period of Gastrodia elata	10.900
	SRR5643515	five period of Gastrodia elata	8.220
	SRR5643524	five period of Gastrodia elata	13.090
	SRR5643525	five period of Gastrodia elata	7.730
	SRR5643528	five period of Gastrodia elata	6.790
	SRR5643658	five period of Gastrodia elata	13.030
	SRR5643659	five period of Gastrodia elata	3.270
	SRR5643660	five period of Gastrodia elata	2.400
	SRR5643661	five period of Gastrodia elata	2.480
	SRR5643662	five period of Gastrodia elata	4.980
	SRR5643663	five period of Gastrodia elata	6.490
	SRR5643664	five period of Gastrodia elata	5.350
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.700
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.250
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.230
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.580
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.150
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.970
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.720
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.960
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.810
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.200
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.610
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.610
SRP279888	Gastro	Gastrodia elata tuber	3.84
	Juven	Juvenile tuber	5.77
	Mother_Gastro	Mother tuber of Gastrodia elata	6.36
	Mother_Juven	Mother tuber of Juvenile	5.18