Gene detail

Detail information of GWHGAAEX007247/evm.TU.scaffold_2.10

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1947	Leucine rich repeat proteins, some proteins contain F-box
nr	gi\|672111237\|ref\|XP_008799696.1\|	PREDICTED: F-box protein At1g47056-like [Phoenix dactylifera]
Swissprot	tr\|Q9C626\|FB37_ARATH	F-box protein At1g47056
trEMBL	tr\|W9R4Y4\|W9R4Y4_9ROSA	F-box protein {ECO:0000313\|EMBL:EXB56509.1}
TAIR	AT1G47056	VIER F-box proteine 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	339413	341005	+

Transcript Sequence
>GWHTAAEX007247 ATGGGCCAGTTTTTTTCTTCTCACGCTCGGCAGTCATCGGTCACCCCGCGGCGCTCCCGAAGCTGCACCTCCTTTGTGATGAATTCCGAAGATTCCGATTCGGAAGAATATGCATCTGTAGACGCTGTTCGCGATTACACTGCAGATCTCCCTGACGAGGTTCTCGCCCTCATATTCCAGGGCCTTGGGTCCAGCGATCGAAAGCGCTGCTCCCTTGTTTGTTGGCGATGGCTCGCGGTCGAGGGTCAGAACCGCCATCGCCTCTCCATTGATGCCCGCGCTTCGCTCCTTGACGCCGTTCCATCCCTCTTTGCGCGCTTTGATGCCGTATCGAAATTGGCTCTCAAGTGCGATCGGCGTGCTGACAGCATCGGCGACGAGGCGCTTGGTCTTATTGCACAGCGTTGTCCTAATCTCACGCGCTTGAAGCTACGGGCTTGCCGCGAGCTGACAGAGGCTGGGATGTCTTTGTTAGCAGAACATTGTCCTAATCTCCGAAAGCTCTCTTGCGGATCTTGTACCTTTGGTGCTCGTGGTGTTGAGGCCATTCTTCGGGGTTGCCCCTTCCTGGAAGAACTCTCTATAAAGCGTCTTCGGGGATTGAACGAGGCAGTCGGGGCGGGCGGCGTCATTGGGATCTCTTTCTCCTCGCTCCGGTCCATTTGCCTTAAGGAGCTCTACAATGGCCAGTGCTTCGGCCCGGTTATTGCCTGCTCGCCAAATCTCCGGACGCTTAAGCTCTTCCGGTGCGCCGGTGAGTGGGATCGCCTTCTTGAAGAGGTTGCGGAGAAGGTGCCCGGACTTGTCGAAGTTCACCTGGAGAAGTTGCAGGTCAGCGATCGTGGCCTCTTCGCCCTTTCATCGTGTACGAATCTCGAGATTCTTCATCTCGTCAAGACGCCAGAGTGTACTGACTCAGGGCTGATTGCTTTTACTGAGAGATGCAGACTACTGAGAAAGATACATATCGATGGCTGGAAGACAAATAGGATTGGCGATGAAGGCCTTATGGCCGTTGCAAAACGATGCCCTAATCTGCAAGAACTGGTTCTTATTGGGGTTAATCCCACTTTTTTGAGCCTTGAGCTTATAGGAAGCAATTGCAGAAATTTGGAAAGACTGGCTCTTTGTGGCAGTGAAACTTTTGGAGATAAGGAGATTTCTTGCATTGCAGCCAAGTGTGTGGCTCTGAAAAAGCTTTGCATTAAGGGCTGCCCTGTTTCTGATCAAGGGATGGAAGCCCTAGCTGATGGTTGCCCTAATTTGGTGAAGGTGAAAGTCAAGAAATGCAGGGCTGTTACTCCACATGTAGCTGATTGGTTGAGGACCACTAGAGTCTCTTTGGCTGTGAATTTAGACAACGTAAATCAGATTGAGCTGCAGGAGGCAAGCATAAGTGAGAGTGGCATTATGGATAATGGTATAGAGGAGATTCCAATTTTGGCTGATCCCTTTTCCACGGTAGATGTTCCAGCAAGCAGCAGTGTTAGGGGTGGGTATTGGAAGAGGATTGGATTTATTTCAGGAAGGAATATATTTGCATCAACTCTTAGGAGATTGTCCCAAGGAATCAACAATTCCAATCACCTATGA

Network for GWHGAAEX007247

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.6	F-box-like	48	79	2.30E-07
PF13516.5	LRR_6	397	416	1.4

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	33.670
SRP064423	SRR2545915	Juvenile tuber	27.440
SRP108465	SRR5643513	five period of Gastrodia elata	56.960
	SRR5643514	five period of Gastrodia elata	45.750
	SRR5643515	five period of Gastrodia elata	51.960
	SRR5643524	five period of Gastrodia elata	43.390
	SRR5643525	five period of Gastrodia elata	65.960
	SRR5643528	five period of Gastrodia elata	58.770
	SRR5643658	five period of Gastrodia elata	57.910
	SRR5643659	five period of Gastrodia elata	42.920
	SRR5643660	five period of Gastrodia elata	37.300
	SRR5643661	five period of Gastrodia elata	39.200
	SRR5643662	five period of Gastrodia elata	47.680
	SRR5643663	five period of Gastrodia elata	40.470
	SRR5643664	five period of Gastrodia elata	55.670
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	56.500
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	33.880
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	49.770
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	60.110
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	50.480
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	64.790
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	55.000
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	52.180
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	40.270
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	44.930
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	46.850
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	46.850
SRP279888	Gastro	Gastrodia elata tuber	40.60
	Juven	Juvenile tuber	101.69
	Mother_Gastro	Mother tuber of Gastrodia elata	64.21
	Mother_Juven	Mother tuber of Juvenile	116.47