Gene detail

Detail information of GWHGAAEX007250/evm.TU.scaffold_2.13

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1609	Protein involved in mRNA turnover and stability
nr	gi\|672144015\|ref\|XP_008795897.1\|	PREDICTED: probable E3 ubiquitin ligase SUD1 [Phoenix dactylifera]
Swissprot	tr\|F4JKK0\|SUD1_ARATH	Probable E3 ubiquitin ligase SUD1
trEMBL	tr\|A0A061E1U8\|A0A061E1U8_THECC	RING/U-box domain-containing protein isoform 1 {ECO:0000313\|EMBL:EOX98306.1}
TAIR	AT4G34100	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	356500	367171	-

Transcript Sequence
>GWHTAAEX007250 GTTGTTTGCAAAAATTTGGGGATTACAGTTCTTTCATACTATAATACAATTATCCCGAAACCTGCTTTCTCTTTCCCTTTGCTTCCTCGCTCATTTCTTTGACCTTGCTCTTCCCTGGTAGTGGAGGAAAAGAGAGACGAAAAGCTGTTGCGGGGCGACGATTTAGAGAGAAAATTAGAGGAAGCTGAAATGGAAGAGGTGGCCGACCACCCAGTTCTGACCGCGGCTGCTCCAAGGCTCGAAGAGGAGGAGGACGAGGGGGATGTCTGCCGGATCTGTCGGAATCCAGGGGACGCCGATAATCCTCTCCGATACCCTTGCGCTTGCAGTGGAAGCATCAAGTTCGTCCATCAGGATTGCCTTCTTCAGTGGCTTAATCATAGCAACGCTCGCCAGTGCGAGGTGTGTAAGCATGTATTCTCCTTCTCCCCGTTGTATGCTGAAAATGCTCCTACAAGACTACCCTTCCGAGAGTTCGTTATTGGGATGGCAATGAAAGCATATTATGTTCTACAATTCTTTCTGCGTCTTGCTTTTGTTCTTTCAGTCTGGCTGCTTATAATACCTTTCATTACATTTTGGATATGGCGTTTGACGTTTGTAAGGAGTTTTGGTGAAGCTCAGAGGCTTTTCATGAGTCACTTGTCTGCTCCCTTGATACTTACAGATTGTCTGCATGGCTTTTTACTGTCAGCTAGCATTGTATTCATCTTTCTTGGCGCAACATCGCTTAGAGATTATTTCAGGCATCTTCGAGAGCTCGGGGGGCATGATGCAGATGATGAGGGTCAAGAAAGGCAGGGTGCCCGCGCTGCTAGGAGAGCTGCTGTCCCTGCAAACAGGGTTCAGGCTGTTGATGGAAATGCTGAAGATGGAGTTGGAGCCCCAGGGAATGCTGGAGCAGGACAAATAATTAGAAGAAATGCAGAAAATGTTGCTGCTCGTTTGGAAATGCATGCAGCACGCCTTGAAGCACATGTTGAGCAGATGTTTGATGGACTTGATGATGCTGATGGTGCAGAAGATGTACCTTTTGATGAACTTGTTGGCATGCAAGGTCCTGTTTTCCATTTAGTTGAAAATGCAATAACGGTCCTGGCAAGCAATGCTATTTTCCTTGGAGTTGTAATTTTCATTCCATTCTCACTCGGGAGGATTGTTCTCTATTATATCTCTTGGTTTTTTTCTTCTTCATCAACTCCAATATTATTTACAATCACCGAGTCAGCCCACTATCTGGCTAACGTTACTTTGAAGAATGCTTTGCCAACATTGAATAATTTATCTGAAAGCAGTGATGATAGTGTTCTGAGCCATGTTATTGAGGCCGTTGGCACAAAATTTAATTCAACTGGAATAAATGAGGTCTCAAGTAGCATCAACAGTTCCATTTCACTGCATGGGGCAATTGCAGGATCTTCTCGCCTTTCCGACGTTACCACTCTTGCCGCGGGGTATATGTTCATTTTCTGTTTGGTTTTCTTTTATCTCGGGCTTTTTACTTTAATTCGATATACTCGGGGTGAACGATTGACGATTGGAAGACTTTATGGAATTGCTTCAATTGCAGAAGCGATTCCTTCTCTCTTTAGACAATTTCTGTCAGGAATGAGACATTTGATGACTATGGTCAAGGTTGCTTTTCTCTTGGTGATAGAGCTTGGAGTCTTCCCTTTGATGTGTGGATGGTGGCTTGATGTTTGTACTTTAAGAATTCTTGGAACAACATTTGCTAAAAGAGTTGAATTCTTTTCACTCTCTCCATTGACTAGCTCCTTAATTCATTGGCTTGTGGGAATTATCTATATGCTACAAATTAGCATCTTTGTTAGTCTTCTACGTGGGGTATTGAGGAATGGAGTTCTGTATTTTCTTAGAGATCCTGCTGATCCAAATTATAATCCGTTCAGAGATCTAATTGATGACCCAGTTCATAAACATGCTCGACGAGTCTTGTTGTCTGTTGCTGTTTATGGAAGCTTGATTGTGATGCTTGTATTCTTACCTGTTAATCTTGCAATGCACTTGGCACCTTCCATTTTTCCGTTGGACATTACCATATTTGATCCATTTACAGAAATTCCAGCTGATGTGCTCCTGTTTCAAATCTGCATCCCTTTTGCAATTGAGCATTTCAAGCCACGTGCAACCATTAAAGCTCTTCTACGCAGATGGTTTACAGCAGTTGGTTGGGCTCTTGGTTTAACAGATTTCTTGCTCCCTAGGCCAGAGGAAAATGCTAGGCAGGAAAATAATAATGTTGAAATACTGAGGAGAGAGAGAATGCATGATGCACGCCAAGCTTTGGGGCAACATCGTCAGCCTTTGGCACAACTAATTGCTGCTGAAGATCATGATAGACGGGGTCATGCTGTTGACCACACTGATGTTGATGAAGAGTCAGATGTTGACGATCAGGCAGATTCTGAGTATGGCTTTGTGTTCCGCATTGTGCTATTGCTGGCGTTGGCATGGATGACTCTTCTGGTTTTCAATGCAACCGTTATTATTGTGCCAATTTCAATCGGACGAGCACTGTTCAATGCAATTCCTCGTCTCCCTTTCACCCATGGTATCAAGTGCAATGATCTCTTTGCTTTCAGTATTGGTTGTTACTTCATCTGGACCATTGTTGCGGGAATCAACTATTCTGCCAAATCTATTAGAAATGGTAGTGCCAGTGCTCTGATATCTCAGATTTGGAAATGGTGCACAATTATTTTGAAAAGCTCAGCCCTTCTCTCTATATGGATATTTGTGATTCCTGTTCTGATCGGCCTTCTCTTTGAGCTGTTGGTGATTGTGCCGATGAGGGTTCCTGTTGATGAAAGCCCTGTTTTCCTCTTATATCAAGATTGGGGTCTCGGGTTGATTTTTCTCAAGATATGGACTAGATTGGTGATGCTGGATCAGATGGCACCGCTGGTGGACGAGAGGTGGCGGGTGAAATTGGTACGGGTGAGAGAGGATGGATTCTCAGGGCTGAGAGGGCTTTGGATTCTGCGTGAGATTGTGATCCCGATCATTACGAAGCTGCTTACTGCATTGTGTGTGCCGTACGTGTTTGCGAGGGGTGTGTTTCCAATCCTCGGATACCCTCTGGTCGTCAACTCGGCCGTGTACCGTTTTGCGTGGCTTGGCTGCCTCCTCTTCAGTGCGCTTTACCTCTGCGTCCGCAGGTTTCACATTTGGTTCACGAATCTCCACAATGCGATTCGCGACGACCGCTATCTCATCGGCCGGAGGCTGCATGACTTTGGCGAGAACAAAGACATGATGGGATTGGGCCGCGATCACGGGCCCGATTCTGGCCTGAGGCTCAGGCCTGCAGCTGCTGCTAATCAGCGTGCAAACCTCTGAAAGGCAAGCCTGTGTAGATTTATTTGTTAGAATGGCTATTTAGGGATCTTTTATTTTATTTTTTGTTGATGCTTTCTGTTTATTTATTATATGTTGGATCTTTACATTTTTGCTGTATATTTCACTAGAAGAGGGGAAAGTGGTTTGCTAAGTAACAAGTTCACAGTCTGATGTCTGGTTTCTTCTGCCTTTCGTGAACTTGGTTAGTGCTTTTGCAACTTTATGAAAGTATTTAAACTGTTCTGCGACGAATGCATCCATTGACTTAGTCTGTATTGATGTTCATAAGCTGTAAGAGAGCTCATTCAGGCGCCTTTGCTGGCCACTGGCTGTCATGTCCC

Network for GWHGAAEX007250

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12906.6	RINGv	27	73	7.10E-16

Protein Sequence

>GWHPAAEX007250
MEEVADHPVLTAAAPRLEEEEDEGDVCRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHVFSFSPLYAENAPTRLPFREFVIGMAMKAYYVLQFFLRLAFVLSVWLLIIPFITFWIWRLTFVRSFGEAQRLFMSHLSAPLILTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGHDADDEGQERQGARAARRAAVPANRVQAVDGNAEDGVGAPGNAGAGQIIRRNAENVAARLEMHAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAITVLASNAIFLGVVIFIPFSLGRIVLYYISWFFSSSSTPILFTITESAHYLANVTLKNALPTLNNLSESSDDSVLSHVIEAVGTKFNSTGINEVSSSINSSISLHGAIAGSSRLSDVTTLAAGYMFIFCLVFFYLGLFTLIRYTRGERLTIGRLYGIASIAEAIPSLFRQFLSGMRHLMTMVKVAFLLVIELGVFPLMCGWWLDVCTLRILGTTFAKRVEFFSLSPLTSSLIHWLVGIIYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVNLAMHLAPSIFPLDITIFDPFTEIPADVLLFQICIPFAIEHFKPRATIKALLRRWFTAVGWALGLTDFLLPRPEENARQENNNVEILRRERMHDARQALGQHRQPLAQLIAAEDHDRRGHAVDHTDVDEESDVDDQADSEYGFVFRIVLLLALAWMTLLVFNATVIIVPISIGRALFNAIPRLPFTHGIKCNDLFAFSIGCYFIWTIVAGINYSAKSIRNGSASALISQIWKWCTIILKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWGLGLIFLKIWTRLVMLDQMAPLVDERWRVKLVRVREDGFSGLRGLWILREIVIPIITKLLTALCVPYVFARGVFPILGYPLVVNSAVYRFAWLGCLLFSALYLCVRRFHIWFTNLHNAIRDDRYLIGRRLHDFGENKDMMGLGRDHGPDSGLRLRPAAAANQRANL

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
K10661	MARCH6, DOA10	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0008270	Molecular Function	zinc ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	261.770
SRP064423	SRR2545915	Juvenile tuber	260.960
SRP108465	SRR5643513	five period of Gastrodia elata	130.020
	SRR5643514	five period of Gastrodia elata	119.160
	SRR5643515	five period of Gastrodia elata	123.420
	SRR5643524	five period of Gastrodia elata	110.980
	SRR5643525	five period of Gastrodia elata	126.810
	SRR5643528	five period of Gastrodia elata	98.500
	SRR5643658	five period of Gastrodia elata	131.630
	SRR5643659	five period of Gastrodia elata	168.050
	SRR5643660	five period of Gastrodia elata	197.630
	SRR5643661	five period of Gastrodia elata	183.700
	SRR5643662	five period of Gastrodia elata	235.050
	SRR5643663	five period of Gastrodia elata	207.350
	SRR5643664	five period of Gastrodia elata	262.230
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	170.450
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	108.550
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	135.360
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	221.980
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	162.430
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	206.110
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	168.840
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	156.330
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	98.220
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	111.230
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	100.960
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	100.960
SRP279888	Gastro	Gastrodia elata tuber	122.91
	Juven	Juvenile tuber	174.06
	Mother_Gastro	Mother tuber of Gastrodia elata	112.50
	Mother_Juven	Mother tuber of Juvenile	151.61