Gene detail

Detail information of GWHGAAEX007256/evm.TU.scaffold_2.21

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|434394192\|ref\|YP_007129139.1\|	5.00E-17	WD-40 repeat-containing protein [Gloeocapsa sp. PCC 7428]
KOG	KOG0266	0	WD40 repeat-containing protein
nr	gi\|743808420\|ref\|XP_010928336.1\|	0	PREDICTED: protein TOPLESS-like isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q94AI7\|TPL_ARATH	0	Protein TOPLESS
trEMBL	tr\|U5D326\|U5D326_AMBTC	0	Uncharacterized protein {ECO:0000313\|EMBL:ERN16630.1}
TAIR	AT1G15750	0	Transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	652870	671411	-

Transcript Sequence
>GWHTAAEX007256 TGATCAGTGGGCCCGTACAATTAAAGGAGCTACCGAAACCCAACAGCGGTCTACTCCACACCCCTAATTTCGCCTTTTCTTCTTGCTCGTTCTGGCTTTTTTCTTCTTCTGCCCTGCCCTCGGTTTTTTCTAGGTAAACCTGCCGCTCTATTTCGTCCTTTATTTTCCCGTCCGAATCTCATCTGCTCTTCTTGAGGTTCTTCGTTTGATCGATCGGCTGCGCCGCCAGCGTGACTTCGAAGGCCATGAGCTCCCTCAGCAGAGAACTCGTCTTCCTCATATTGCAGTTTTTAGATGAGGAGAAGTTCAAGGAAACTGTCCACAAGTTGGAGCAAGAATCTGGGTTTTATTTCAACATGAAGCACTTTGAGGAGGTGGTGCTTGCCGGAAATTGGGAGGAGGTTGAAAAGTACCTCTCCGGGTTCACTAAGGTCGATGATAACCGGTACTCGATGAAGGTTTTCTTTGAGATCCGAAAACAGAAGTACCTGGAGGCTTTGGATAAGAAAGAGCGGGCGAAGGCAGTGGATATACTCATGAAGGACCTCAAGGTTTTTGCTGCTTTCAATGAGGACCTATTTAAGGAGATCACCCAGCTTCTAACCTTGGAAAATTTTAGGGAAAATGAGCAGCTTTCCAAGTACGGTGATACAAAATCGGCTAGATCTGTGATGCTCTCGGAGCTTAAAAAGTTAATTGAGGCCAATCCATTGTTCCGTGATAAACTGCAGTTCCCCAACCTTAAAAACTCGAGATTAAGGACACTCATTAATCAGAGTTTGAATTGGCAGCATCAACTGTGTAAAAATCCTAGGCCAAACCCAGATATTAAAACTTTGTTCTATGATCACTCTTGCTCCCAGCCAAATGGGGCTCGTGTAGCTTCACCAGCTCCTCCAGTCATGAATGTGATGCAAAAACCAGGAGGGTTCCCACAACTAGGTCCTCATCCAGGGGCTGGTGTTATTACGCAATTTCAACCTCAAGCAACAGCCCTTCCAGCACCTCTTACTGGATGGATGGCCAATGCATCTAATGCCACTTCAATGCCGCATCCGGCAATGTCAGCTGGTCCCCTTGGTCTAGCTGCCCCTTCAAATACAGCTGCTTTGTTGAAGCATCCTGCTAGCAATCCACATATGGACTATCATTCTGCAGATTCTGAACATGTTCATAAAAGACAACGTCCTATGGGAACATCTGATGAAGTTGCTTTACCTACGACTCATTTACCAGTTGCATATGCTGGCATTTCTAGAAGCCAGCACAGTATTGATGAATTGCCAAAGAATGTTGCTGCAACTTTAAACCAGGGTTCTACTGTGACAAGCATGGATTTTCATCCTTCTCAACCCACTCTTCTTCTTGTTGGTACCAATGTTGGTGATGTTGCTGTTTGGGAGGTGTCTTGCAGGGAGAGGCTTGCTCACAGAAATTTTAAGGTCTGGGAACTTTCTTCATGTTCGACACTTTTCCAGTCTACTTTGGTTAAGGATCCTTCAATTTATGTTAATCGTGTTCTTTGGAGTCCAGATGGCAATCAATTTGGTGTTGCATACTCAAAGCATCTTGTGCACTTTTACGATTTCAATGGCCGTGATGACCTAGTACAGCATTTTGAAATTGATGCACACATTGGAGGGGTAAATGACATTGCATTCTCACAACCAAACAAGAAATTATGCATCGTGACTTGTGGAGATGATAAGATGATCAAGGTATGGGATGCTGCTACAGCTGTGGTTCAGTATGCCTATGAAGGTCATGAGGCGCCGGTTTACTCCATATGCCCACATTCAAAGGAAAATATTCATTTTATCTTTTCAACCTCTTTAGATGGGAAAATTAAAGCTTGGTTGTATGATAATGGAGGCTCTAGAGTGGATTATACAGCTCCGGGACAATGGTGCACTTCGATGGCTTATAGTGCTGATGGAACAAGGCTGTTCTCCTGTGGGAGTAGTAAGGAGGGAGATTCATATATTGTTGAATGGAATGAGAGTGAAGGCTCTGTAAAGAGAACATATTCTGGTTTCCGTAAAAGATCAATGGGAGTAGTGCAGTTTGATACAACAAAGAGTCGATTTTTGGCTGCTGGAGATGAGTTTATGATTAAGTTTTGGGACATGGACAATACTAACCTTCTGACAACAACAGATGCAGAGGGTGGATTACCGGCTTCTCCACGGATTCGCTTCAACAAGTTAGGGTCACTCTTAGCTGTTTCAACTAGTGAAAATTGTATAAAGATTTTAGCAAATGTTGAGGGATTTCAATTGTTGCGATCTCTTGAAACTAGATTATACAGTGCTTCTAGACCAGTTTCTGATCAAAAGCCTCCCACCATCAGCCCCTTGGGAACTGTCAGTTCTGTCCCAGTAACTAGTGCTGCTGATGTTGATCGTGGCACCCAAGTAGCTCCCATAGGCTCATTGCCAAGTGGTGATAATCGTACTATTGCTGATGTCAAGCCTCGTGTTGTTGATGAGTTACTTGAGAAAACAAATGTGTGGAAACTCGTTGAAATCAATGAACCTTCTTTATGCAACTCTCTTAGGCTTCCGGACAATTTATTAGCAGTAAAGATTGCCAGGCTTATCTACACCAATACAGGCATTGCAATCCTGGCCTTAGCATCTAATGCTGTTCACAAACTATGGAAATGGCCAAAAACTGACAGAAACGTCTCTGGAAAGGCAACTGCCGTTGCTGTGCCACAGATATGGCAACCTTCAAGCGGAATACTGATGACTAATGAAACCAGTGATGCCAACTCAGAAGAAGCTATTCATTGTTTTGCTCTATCAAAGAATGACTCTTATGTCCTGTCTGCATCTGGTGGAAAGATTTCCCTCTTCAATATGATGTCTTTCAAGACAATGACCACTTTCATGCCTCCACCGCCAGCAGCCACCTTCCTTGCTTTTCATCCACAGGACAATAACATCATTGCTATCGGCATGGACGACTCCTCAATCCAAATATACAATGTTCGCGTTGACGAGGTTAAAAGCAAACTCAGAGGACATCAAAAGAGGATCACCGGCCTTGCATTTTCCAACGTCCTAAACATTCTCATCTCTTCAGGAGCAGATGCTCAGCTGTGCGTATGGGGCATGAATGCATGGGACAAGCAATGCAGCAAGCTCTTGCAGGTTCCTCCTGGCCGAACTTCGGGCCCAATTGCAGAGACAAAGGTTCAGTTCCACCAGGATCAGGTTCAGTTCCTGGTTGTGCATGAGTCCCAGATTGCAATATACGAAGCAAGAAAGCTGGAGTGCCTTAAACAGTGGGTCCCACGAGAAGGTTTGGTAACACATGCAACTTATTCCTGCGACAGCCAGATGATATACGCGAGCTTCACCGACGGAAGTGTGAGCGTCTTCACTTCAATGCTTAGACTGAGGTGTCGGATAAACCCTGCCGCATACCTCAATTCCCCGCCAAGCTCGAGCATTTATCCGGTTGTGATTGCTTCCAATCCGACGGACCCGAATCAGTTTGCCGTAGGCTTGAGCGATGGTGGAGTGCACGTGGTTGAGCCTGTTGAATCACAAGGGAAATGGGGCTCTGCTCCTCCCGCATTGGAGAGTGTGGCCTGTTCAAGCGCTGCCCAGCCTTCTGGAAACCCTAATTCAGATCAACCGTCCAGATGAGGAGGAGCCGATCGCCCATCAAACCACATCCGCTGCTTCTTTCTTCTTTTTTTTTTTCTTCTTCCTTTCAATTATTGGCCTACTTCCTCGTGGGATATAACTCGGAGTTGCCGTCTCCCAGAAAACCCTAATTAGGTGCTCTGAGGCCAAGACATCAATTCTTTCTTGCTGAAACAGTGGCATCAAAGCTGAAGAAGGTACTACTTGCTGCGCAGATTAACACAACAAAAAATGGCCGTCTTTTGAAGTTGCGGAGCTTGCGGCGGTTTGTGGAAGAGTTTTTAGGTCGTTGAAGCTGCTGCCCCTCTGCCCGCCTTATGTCTTCTTCTTGTACTTAGAGATGAATTATTATTACCTTTTTATTTTCAATTTTGCATTTTTTGAATTATTATTATTTTCATGAATGTCTTCTATTTTATTTCCACGTAATGTAATGCAATTCTTATATCTATATGTCATTGTATTTTCCCCATTCATTGTATTGAGGCTTGGGTTTTTATAGTTGTTGAGAAGTGAGGGATTCAATATATTGAGGC

Network for GWHGAAEX007256

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	456	494	0.00036
PF00400.31	WD40	924	956	0.05

Protein Sequence

>GWHPAAEX007256
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFYFNMKHFEEVVLAGNWEEVEKYLSGFTKVDDNRYSMKVFFEIRKQKYLEALDKKERAKAVDILMKDLKVFAAFNEDLFKEITQLLTLENFRENEQLSKYGDTKSARSVMLSELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFYDHSCSQPNGARVASPAPPVMNVMQKPGGFPQLGPHPGAGVITQFQPQATALPAPLTGWMANASNATSMPHPAMSAGPLGLAAPSNTAALLKHPASNPHMDYHSADSEHVHKRQRPMGTSDEVALPTTHLPVAYAGISRSQHSIDELPKNVAATLNQGSTVTSMDFHPSQPTLLLVGTNVGDVAVWEVSCRERLAHRNFKVWELSSCSTLFQSTLVKDPSIYVNRVLWSPDGNQFGVAYSKHLVHFYDFNGRDDLVQHFEIDAHIGGVNDIAFSQPNKKLCIVTCGDDKMIKVWDAATAVVQYAYEGHEAPVYSICPHSKENIHFIFSTSLDGKIKAWLYDNGGSRVDYTAPGQWCTSMAYSADGTRLFSCGSSKEGDSYIVEWNESEGSVKRTYSGFRKRSMGVVQFDTTKSRFLAAGDEFMIKFWDMDNTNLLTTTDAEGGLPASPRIRFNKLGSLLAVSTSENCIKILANVEGFQLLRSLETRLYSASRPVSDQKPPTISPLGTVSSVPVTSAADVDRGTQVAPIGSLPSGDNRTIADVKPRVVDELLEKTNVWKLVEINEPSLCNSLRLPDNLLAVKIARLIYTNTGIAILALASNAVHKLWKWPKTDRNVSGKATAVAVPQIWQPSSGILMTNETSDANSEEAIHCFALSKNDSYVLSASGGKISLFNMMSFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLRGHQKRITGLAFSNVLNILISSGADAQLCVWGMNAWDKQCSKLLQVPPGRTSGPIAETKVQFHQDQVQFLVVHESQIAIYEARKLECLKQWVPREGLVTHATYSCDSQMIYASFTDGSVSVFTSMLRLRCRINPAAYLNSPPSSSIYPVVIASNPTDPNQFAVGLSDGGVHVVEPVESQGKWGSAPPALESVACSSAAQPSGNPNSDQPSR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	53.800
SRP064423	SRR2545915	Juvenile tuber	56.260
SRP108465	SRR5643513	five period of Gastrodia elata	41.020
	SRR5643514	five period of Gastrodia elata	36.240
	SRR5643515	five period of Gastrodia elata	38.660
	SRR5643524	five period of Gastrodia elata	36.320
	SRR5643525	five period of Gastrodia elata	28.720
	SRR5643528	five period of Gastrodia elata	27.570
	SRR5643658	five period of Gastrodia elata	34.190
	SRR5643659	five period of Gastrodia elata	46.390
	SRR5643660	five period of Gastrodia elata	49.150
	SRR5643661	five period of Gastrodia elata	46.640
	SRR5643662	five period of Gastrodia elata	65.490
	SRR5643663	five period of Gastrodia elata	59.340
	SRR5643664	five period of Gastrodia elata	68.240
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	43.510
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	49.690
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	47.020
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	53.630
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	85.710
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	90.350
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	61.980
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	67.840
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	43.390
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	59.560
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	38.570
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	38.570
SRP279888	Gastro	Gastrodia elata tuber	74.28
	Juven	Juvenile tuber	63.32
	Mother_Gastro	Mother tuber of Gastrodia elata	68.85
	Mother_Juven	Mother tuber of Juvenile	66.85