Detail information of GWHGAAEX007258/evm.TU.scaffold_2.28


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|720028981|ref|XP_010265079.1|4.01E-32PREDICTED: zinc finger protein 6-like [Nelumbo nucifera]
Swissprottr|Q39265|ZFP6_ARATH1.00E-20Zinc finger protein 6
trEMBLtr|A0A0A0KRQ5|A0A0A0KRQ5_CUCSA5.00E-31Uncharacterized protein {ECO:0000313|EMBL:KGN51544.1}
TAIRAT1G683604.00E-21C2H2 and C2HC zinc fingers superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000010840333841385-
Transcript Sequence

Network for GWHGAAEX007258

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2H2

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms5.680
SRR2545915Juvenile tuber3.240
SRP108465SRR5643513five period of Gastrodia elata12.810
SRR5643514five period of Gastrodia elata4.990
SRR5643515five period of Gastrodia elata2.510
SRR5643524five period of Gastrodia elata3.620
SRR5643525five period of Gastrodia elata2.910
SRR5643528five period of Gastrodia elata1.190
SRR5643658five period of Gastrodia elata5.010
SRR5643659five period of Gastrodia elata10.870
SRR5643660five period of Gastrodia elata20.040
SRR5643661five period of Gastrodia elata14.730
SRR5643662five period of Gastrodia elata14.220
SRR5643663five period of Gastrodia elata14.360
SRR5643664five period of Gastrodia elata11.360
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_18.660
SRR6049655Rhizomagastrodiae_C368-T10_good_123.780
SRR6049656Rhizomagastrodiae_C368-T07_good_17.370
SRR6049657Rhizomagastrodiae_C368-T07_good_15.700
SRR6049658Rhizomagastrodiae_C368-T04_good_17.010
SRR6049659Rhizomagastrodiae_C368-T04_good_16.130
SRR6049660Rhizomagastrodiae_C368-T01_good_16.370
SRR6049661Rhizomagastrodiae_C368-T04_good_18.680
SRR6049662Rhizomagastrodiae_C368-T01_good_19.480
SRR6049663Rhizomagastrodiae_C368-T01_good_16.760
SRR6049664Rhizomagastrodiae_C368-T10_good_113.760
SRR6049665Rhizomagastrodiae_C368-T10_good_113.760
SRP279888GastroGastrodia elata tuber 6.78
JuvenJuvenile tuber7.07
Mother_GastroMother tuber of Gastrodia elata 0.86
Mother_JuvenMother tuber of Juvenile 2.35