Gene detail

Detail information of GWHGAAEX007260/evm.TU.scaffold_2.31

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743772183\|ref\|XP_010916393.1\|	8.77E-153	PREDICTED: endonuclease 4-like [Elaeis guineensis]
Swissprot	tr\|Q9C9G4\|ENDO2_ARATH	1.00E-116	Endonuclease 2 (Precursor)
trEMBL	tr\|K3XKF7\|K3XKF7_SETIT	1.00E-151	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si002380m}
TAIR	AT1G68290	4.00E-116	endonuclease 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	952438	960973	+

Transcript Sequence
>GWHTAAEX007260 AATTTTTATTTAAGACAATATATAAATAAAAAACAAATCAGTGGCTTGCAAGAGAAAAACTCGATTAAATAAACCGGAGATATTTAATCGCATGAGGATACCATGACGGATCCACGGCCATGATAAATACACCCATCGGAGCAGAGAGAGAGAGAGCAAAAACAGGGGGGATTTTGAAAGAAATTTGGGGGTAGAATGGAGGATGATGATCATCATCGTCCCTCAACATTGCGTCTCCTTCTCATCTTGGTCTCATCAGTTATGGTGGCGAGAGCTCCAGTGGGGGAAGCATGGGGAAAAGAGGGCCATATCATGGCTTGCAAGATAGCGGAGGCGTACTTGACGGAAAGGACGCAGAAGGCGGTGGTGGATCTGTTGCCGGAGTCGGCCGGCGGCGAACTGGCGGTGATGTGTCCGTGGGCTGACACTATTCGGTTCCGGTATCGCTGGGCGAGCCCTCTTCACTATATTAACACGCCCGGAGTCTGCAACTACAAGTACTCAAGGGATTGCCACAATTCCAGAGGAGAAATAGGAATGTGCGTAGCCGGTGCTATCAACAATTTCACTGAGCAGCTTCGGAGCTATGGAAATCCATCAAATCAGTATAACTTAACTGAAAGCCTTATGTTCCTCGCTCATTTCGTCGGGGACATCCACCAGCCTCTGCATGTGGGATTCGCAGATGATGAAGGGGGAAACACTATAATAGTTCACTGGTATAAAAGGAAGTCAAACCTTCATCATGTATGGGATTCCAGTATAATCCAAACAGCGATGCGCGACTACTACAGAAATGATCTCAATACGATGGCTGAGACCATTAAACTAAATATAACAGGCGGATGGGCGGATGAAGTCGATCATTGGCAAAACTGCCGCAACAAAATGGCAACCTGCGCAAATGATTATGCATCAGAAAGTATACAGCTAGCTTGTAACTACGCATACAAGGATGCTGAGCAGGATTCAACATTAGGGGACGAGTATTTCTTCACTCGGCTTCCAGTCGTAAAGAAGAGAATCGCACAGGCAGGAATGCGGCTAGCTTCGATACTTAACCGAATTTTTGACGGCGAAAGCGCCGAAGAAGTCAACATTTACTAAGGTTTATGTATAAATGTTAGCTAGGTCTGTGGACATTGTTCTGAATAAATTGATGTGATCTTTCTTATTATTGATGTAAGAATAAATGCTGAATTTGTTCGGAAGTGATGATAAAGCTAGCTTCAACCATCAGCTAATCAGTGTGATGTTGCGCTGGTGGAGATTTATTGTAAGCATTTTAATCTTCAGAAAAGCAGAATAAATCTAAAGGCTGTGGAAATGATTGAATTGAAGTAGTTGAAGTTTTGCACTCATTTTTGAAGATTAATAGTCATTGATGGACGTGAAGTTTAATAGTGATTGATGAATACGGGATTACAATTTTGGGGAGTTTGATGTATTTATGCATCATTGACGGCCGTGTGGTTTTGTGTGATTTTTGGGAGGTTCCAAAGTATTTTGAGTTTTTTATGTTGTTTAATTGAGATTAAATATTTCATATTGTATATAAACTTTGAGAGTTTAAGAGGAAAACAATTGAGAAGCACTTTGTAATCCTCTTCATTCGTAGTGAAATTCTTCCTTTCCGATTCTCACCAAACCATGTAAATTCACATGTCTTTTGTGCTTGCCAATTTTTGCAACTTATTTATTTTCTCACTTCGACGATCCGTTCTTCGAGAACATGGTTGTGATC

Network for GWHGAAEX007260

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02265.15	S1-P1_nuclease	33	293	5.30E-81

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006308	Biological Process	DNA catabolic process
GO:0003676	Molecular Function	nucleic acid binding
GO:0016788	Molecular Function	hydrolase activity, acting on ester bonds
GO:0004519	Molecular Function	endonuclease activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	47.590
SRP064423	SRR2545915	Juvenile tuber	128.430
SRP108465	SRR5643513	five period of Gastrodia elata	310.650
	SRR5643514	five period of Gastrodia elata	165.650
	SRR5643515	five period of Gastrodia elata	255.440
	SRR5643524	five period of Gastrodia elata	297.920
	SRR5643525	five period of Gastrodia elata	586.290
	SRR5643528	five period of Gastrodia elata	826.870
	SRR5643658	five period of Gastrodia elata	775.810
	SRR5643659	five period of Gastrodia elata	50.800
	SRR5643660	five period of Gastrodia elata	44.670
	SRR5643661	five period of Gastrodia elata	61.410
	SRR5643662	five period of Gastrodia elata	40.060
	SRR5643663	five period of Gastrodia elata	40.880
	SRR5643664	five period of Gastrodia elata	21.380
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	70.200
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	69.590
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	94.580
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	103.780
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	54.620
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	43.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	64.970
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	89.820
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	68.740
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	43.590
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	83.930
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	83.930
SRP279888	Gastro	Gastrodia elata tuber	84.53
	Juven	Juvenile tuber	99.82
	Mother_Gastro	Mother tuber of Gastrodia elata	351.82
	Mother_Juven	Mother tuber of Juvenile	131.50