Detail information of GWHGAAEX007271/evm.TU.scaffold_2.49


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|257094183|ref|YP_003167824.1|1.00E-23WD-40 repeat-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1]
KOGKOG02991.00E-153U3 snoRNP-associated protein (contains WD40 repeats)
nrgi|672122876|ref|XP_008784782.1|0PREDICTED: LOW QUALITY PROTEIN: U3 small nucleolar RNA-interacting protein 2-like [Phoenix dactylifera]
Swissprottr|Q9C4Z6|GPLPB_ARATH7.00E-19Guanine nucleotide-binding protein subunit beta-like protein B
trEMBLtr|M0RGH1|M0RGH1_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P08450_001}
TAIRAT4G054101.00E-153Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001016986761710719-
Transcript Sequence

Network for GWHGAAEX007271

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module7

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.31WD402252510.0018
PF00400.31WD402572931.80E-05
PF00400.31WD403403740.0007
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms6.440
SRR2545915Juvenile tuber10.540
SRP108465SRR5643513five period of Gastrodia elata11.280
SRR5643514five period of Gastrodia elata9.980
SRR5643515five period of Gastrodia elata9.500
SRR5643524five period of Gastrodia elata9.540
SRR5643525five period of Gastrodia elata3.840
SRR5643528five period of Gastrodia elata4.250
SRR5643658five period of Gastrodia elata2.380
SRR5643659five period of Gastrodia elata21.930
SRR5643660five period of Gastrodia elata22.340
SRR5643661five period of Gastrodia elata19.700
SRR5643662five period of Gastrodia elata14.520
SRR5643663five period of Gastrodia elata20.420
SRR5643664five period of Gastrodia elata17.120
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_19.610
SRR6049655Rhizomagastrodiae_C368-T10_good_19.360
SRR6049656Rhizomagastrodiae_C368-T07_good_110.210
SRR6049657Rhizomagastrodiae_C368-T07_good_112.240
SRR6049658Rhizomagastrodiae_C368-T04_good_110.840
SRR6049659Rhizomagastrodiae_C368-T04_good_17.740
SRR6049660Rhizomagastrodiae_C368-T01_good_110.990
SRR6049661Rhizomagastrodiae_C368-T04_good_110.110
SRR6049662Rhizomagastrodiae_C368-T01_good_110.690
SRR6049663Rhizomagastrodiae_C368-T01_good_111.140
SRR6049664Rhizomagastrodiae_C368-T10_good_19.310
SRR6049665Rhizomagastrodiae_C368-T10_good_19.310
SRP279888GastroGastrodia elata tuber 30.78
JuvenJuvenile tuber27.12
Mother_GastroMother tuber of Gastrodia elata 7.36
Mother_JuvenMother tuber of Juvenile 19.23