Detail information of GWHGAAEX007272/evm.TU.scaffold_2.50


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16032.00E-32Copper chaperone
nrgi|672172351|ref|XP_008806263.1|6.75E-69PREDICTED: RNA polymerase II degradation factor 1-like [Phoenix dactylifera]
Swissprottr|O82089|CCH_ARATH1.00E-10Copper transport protein CCH
trEMBLtr|M0SAU7|M0SAU7_MUSAM2.00E-64Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P01290_001}
TAIRAT1G230002.00E-32Heavy metal transport/detoxification superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001017886071790646-
Transcript Sequence

Network for GWHGAAEX007272

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module7

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00403.25HMA17722.60E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0030001Biological Processmetal ion transport
GO:0046872Molecular Functionmetal ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms68.270
SRR2545915Juvenile tuber110.540
SRP108465SRR5643513five period of Gastrodia elata204.160
SRR5643514five period of Gastrodia elata162.960
SRR5643515five period of Gastrodia elata115.260
SRR5643524five period of Gastrodia elata163.230
SRR5643525five period of Gastrodia elata114.400
SRR5643528five period of Gastrodia elata40.550
SRR5643658five period of Gastrodia elata81.200
SRR5643659five period of Gastrodia elata86.720
SRR5643660five period of Gastrodia elata80.400
SRR5643661five period of Gastrodia elata63.900
SRR5643662five period of Gastrodia elata38.680
SRR5643663five period of Gastrodia elata53.630
SRR5643664five period of Gastrodia elata62.830
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1119.830
SRR6049655Rhizomagastrodiae_C368-T10_good_1241.800
SRR6049656Rhizomagastrodiae_C368-T07_good_1148.450
SRR6049657Rhizomagastrodiae_C368-T07_good_1118.700
SRR6049658Rhizomagastrodiae_C368-T04_good_179.940
SRR6049659Rhizomagastrodiae_C368-T04_good_173.360
SRR6049660Rhizomagastrodiae_C368-T01_good_1134.900
SRR6049661Rhizomagastrodiae_C368-T04_good_193.030
SRR6049662Rhizomagastrodiae_C368-T01_good_1136.160
SRR6049663Rhizomagastrodiae_C368-T01_good_1130.580
SRR6049664Rhizomagastrodiae_C368-T10_good_1158.010
SRR6049665Rhizomagastrodiae_C368-T10_good_1158.010
SRP279888GastroGastrodia elata tuber 80.30
JuvenJuvenile tuber308.87
Mother_GastroMother tuber of Gastrodia elata 13.74
Mother_JuvenMother tuber of Juvenile 70.46