Detail information of GWHGAAEX007278/evm.TU.scaffold_2.57


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|14520580|ref|NP_126055.1|6.00E-1173-hydroxy-3-methylglutaryl-coenzyme A reductase [Pyrococcus abyssi GE5]
KOGKOG248003-hydroxy-3-methylglutaryl-CoA (HMG-CoA) reductase
nrgi|532130959|gb|AGT78194.1|03-hydroxy-3-methylglutaryl coenzyme A reductase [Dendrobium huoshanense]
Swissprottr|O24594|HMDH_MAIZE03-hydroxy-3-methylglutaryl-coenzyme A reductase
trEMBLtr|T1ULS4|T1ULS4_9ASPA03-hydroxy-3-methylglutaryl coenzyme A reductase {ECO:0000256|RuleBase:RU361219}
TAIRAT1G764900hydroxy methylglutaryl CoA reductase 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001021497482152943-
Transcript Sequence

Network for GWHGAAEX007278

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00368.17HMG-CoA_red1665416.80E-144
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00021HMGCR Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Terpenoid backbone biosynthesismap00900
AMPK signaling pathwaymap04152
Bile secretionmap04976

Gene Ontology

GO term OntologyName
GO:0015936Biological Processcoenzyme A metabolic process
GO:0008299Biological Processisoprenoid biosynthetic process
GO:0055114Biological Processoxidation-reduction process
GO:0016616Molecular Functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0004420Molecular Functionhydroxymethylglutaryl-CoA reductase (NADPH) activity
GO:0050662Molecular Functioncoenzyme binding
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms15.890
SRR2545915Juvenile tuber42.490
SRP108465SRR5643513five period of Gastrodia elata7.400
SRR5643514five period of Gastrodia elata11.240
SRR5643515five period of Gastrodia elata12.030
SRR5643524five period of Gastrodia elata15.750
SRR5643525five period of Gastrodia elata7.390
SRR5643528five period of Gastrodia elata5.630
SRR5643658five period of Gastrodia elata2.600
SRR5643659five period of Gastrodia elata131.130
SRR5643660five period of Gastrodia elata190.190
SRR5643661five period of Gastrodia elata147.760
SRR5643662five period of Gastrodia elata89.540
SRR5643663five period of Gastrodia elata42.090
SRR5643664five period of Gastrodia elata95.570
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_144.120
SRR6049655Rhizomagastrodiae_C368-T10_good_166.650
SRR6049656Rhizomagastrodiae_C368-T07_good_186.490
SRR6049657Rhizomagastrodiae_C368-T07_good_174.160
SRR6049658Rhizomagastrodiae_C368-T04_good_163.940
SRR6049659Rhizomagastrodiae_C368-T04_good_164.010
SRR6049660Rhizomagastrodiae_C368-T01_good_1157.840
SRR6049661Rhizomagastrodiae_C368-T04_good_1118.470
SRR6049662Rhizomagastrodiae_C368-T01_good_172.830
SRR6049663Rhizomagastrodiae_C368-T01_good_175.440
SRR6049664Rhizomagastrodiae_C368-T10_good_138.490
SRR6049665Rhizomagastrodiae_C368-T10_good_138.490
SRP279888GastroGastrodia elata tuber 23.81
JuvenJuvenile tuber72.19
Mother_GastroMother tuber of Gastrodia elata 13.78
Mother_JuvenMother tuber of Juvenile 39.82