Detail information of GWHGAAEX007282/evm.TU.scaffold_2.62
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|434394291|ref|YP_007129238.1| | 3.00E-14 | glycosyl transferase family 2 [Gloeocapsa sp. PCC 7428] |
| nr | gi|695003732|ref|XP_009387033.1| | 0 | PREDICTED: cellulose synthase-like protein D4 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9SZL9|CSLD4_ARATH | 0 | Cellulose synthase-like protein D4 |
| trEMBL | tr|A0A059B913|A0A059B913_EUCGR | 0 | Uncharacterized protein {ECO:0000313|EMBL:KCW62371.1} |
| TAIR | AT4G38190 | 0 | cellulose synthase like D4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000010 | 2397416 | 2403245 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007282
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14570.5 | zf-RING_4 | 124 | 172 | 8.20E-14 |
| PF03552.13 | Cellulose_synt | 344 | 1098 | 0 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030244 | Biological Process | cellulose biosynthetic process |
| GO:0016760 | Molecular Function | cellulose synthase (UDP-forming) activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.240 |
| SRR2545915 | Juvenile tuber | 2.160 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.900 |
| SRR5643514 | five period of Gastrodia elata | 4.270 | |
| SRR5643515 | five period of Gastrodia elata | 6.160 | |
| SRR5643524 | five period of Gastrodia elata | 4.300 | |
| SRR5643525 | five period of Gastrodia elata | 3.640 | |
| SRR5643528 | five period of Gastrodia elata | 1.960 | |
| SRR5643658 | five period of Gastrodia elata | 1.750 | |
| SRR5643659 | five period of Gastrodia elata | 8.310 | |
| SRR5643660 | five period of Gastrodia elata | 9.430 | |
| SRR5643661 | five period of Gastrodia elata | 8.840 | |
| SRR5643662 | five period of Gastrodia elata | 10.920 | |
| SRR5643663 | five period of Gastrodia elata | 14.320 | |
| SRR5643664 | five period of Gastrodia elata | 14.780 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.280 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.680 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.890 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.980 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.960 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.530 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.020 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.530 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.820 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.400 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.080 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.080 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.46 |
| Juven | Juvenile tuber | 3.93 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.13 | |
| Mother_Juven | Mother tuber of Juvenile | 3.78 |