Gene detail

Detail information of GWHGAAEX007287/evm.TU.scaffold_2.70

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG4416	Uncharacterized conserved protein
nr	gi\|743862573\|ref\|XP_010943570.1\|	PREDICTED: TBCC domain-containing protein 1-like [Elaeis guineensis]
trEMBL	tr\|M0S1C1\|M0S1C1_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P19630_001}
TAIR	AT3G57890	Tubulin binding cofactor C domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	2730673	2817335	-

Transcript Sequence
>GWHTAAEX007287 ATCGGGTGGAAATATGACCACTGTTAAAATCTCTTTCCCAATCCCAAACTCGGACATATAATTCCATCACCGGCAAAATCTTCTTCCCCGAAAGTGAACCGACGACATGATCGACGACGTGCTTGTGCCTTCGACCTCCTTCTCCCCTTCCCATCCCATCAGTGTTTGTGCTCCCCCTCTCCTCTTGCGACCGAGACGTGAACCATTCGAGCACGGTCTTCTACCCATCCCGAAGTTGATCTTTTCCGATGGAACCCTAACTTTAACTCCTCTCAAGCAGCGTCTCCTCCAGCTTCCTTCCGGTCGGGTCGATGCGGCATCGCTGGCGGACGTTCTCCAGATATCTGTAGACCACGCCAATCTTGTCTTCGACACCCTTGCCGCCGTTCTTCCAGGGGATTCCGATCTCGGAAGTGTCGATGCCTATGACCTTATCTTGTTCCTCTACATACAATCTTACAAAAGGCTGGTCCCTAAGCCACACAAGGACTCTGTAGCTGTCGCTGATGTTTGGCCATCTACTTCGGCCTTCGATGGGTACCTTTCAGCTCTTACGCCGCTTCAGCTTGTACGCAGCAACACTCGACGATTTATGCCTTCACAAGCTGATGATGAAGCTCATCAACTGTCGTATTTGCAGAAACATTGTGCAAACATACTTTCCCTCTTAGCTGAAACTACAGATGGACAGGGTGACGAATCTCTGATTCTGACAATGGAAAGATTCGAGCGTCTTGGTTTCCTCATTCAGTTTGAGAAAGAATGTGAATTAGTTCCTTTGAGCCAAGCAACTCCTTTTTTTGCAAATTCAGATCCAGACATGCCTGCTGTTCCTGTTTCAGCTGTCCATGTTCAGAACTGGATTTCACAAAACATAACTGCTACATTGGAGCATAATGCTGAGAAAACAAGAGCGAAGGAAAATGGCCCTTCAATGGCCTTGGATGGTGATGTGACTATGGCAGATGCAAGTTCATTCAATTCAAGGGATCAGAACAGTATTTCACAAAATGGGGGTTTAATGCAATACAGTTCCACTAATTCTAGAAGTCAGACATTTGTGGAAGGAATATCCAAAGCTTCATTAGTCAAGCAACCACACGAGATCAAAGGACCTTCCGTTAAGGTTTTGAATTGCCACGACTCTGTGATTTATATATTAGCACCATTGAGATATGCTACTGTTTATGGATGTTCTCATGCAACTGTTATCCTTGGTGCTATTGGTAAGGCTATAAGAGTGGAACACTGTGAAAGTGTGCAAGTGATTGCTGCTACAAAGAGAATTTGTATTGCAAATTGTCGAGACTGTGTGTTTTATTTGGGAGTTAATCAGCGGCCTCTTATTCTTGGAGATAATCATAAATTACAGGTGGCACCATTCAATACCTTTTATCCACAACTAGAGGAGCATTTAGCGCATTCAGGAATTAATTCAGCCATTAATAAGTGGGATGATCCCCTTGTTCTTGGTGTGGTTGATCCTCATGATTCACTTTCTCATCCGGCTGGAACCTCTGAGGTTCAAGCTGAGTCAGCAGTCTGCCTTGATCCTGAGCAATTCACAAATTTCTGGGTTCCCAACTGGTCTGGATCTGGATCATCACAATTAACAAGATGTAATCCTTTTTCATTACCTAGTGCTTATGCGGCTTCTCAGAGGAACAAGCATTTGCTTATGGCTGATATCCAGAATGCTATAAAGGATTTACAAATTGACGACAACAGGAGAAAGGAGTTAGCTTGTGCCCTTCACACACATTTTAAAGATTGGTTATATGTTTCTGGGAACATTCGTCAGCTCTACTGCCTGCATGGGGATTGAAATCATTTGGCAGCTCCTTGGTTTTGTAAAGGCCTCTATCTCATTTTTTTTCAATCCCGGTATGTGAATATATGCTATACAGCATCTTCAGCAGCTGTGTTATTTTCCAGGAATTTTTGGCGGTCTTTATTTAAACAGGATTTTATTTGTTTGTCGAGTGCCGAAATAAATACGAAAATGTTAAGAGAAAAGGAAGTGGTCCCAAACTTCTGAATTCACCGCCATTGATGTAGTTGTAGTTGTTGTTGTTGTTTCTTTTGGCATTCTGACTTTAATATTGAATTACCATTAAAGAACTGTATATTGTTTTGCTTGTTGTATCTCGTTGCATTGTACATATTTTTTTTTTCACCTTAAAATCACCCTTTCTATTCAAGATTATGATTTCCGCTG

Network for GWHGAAEX007287

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07986.11	TBCC	338	451	1.10E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0000902	Biological Process	cell morphogenesis

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	44.140
SRP064423	SRR2545915	Juvenile tuber	45.450
SRP108465	SRR5643513	five period of Gastrodia elata	41.120
	SRR5643514	five period of Gastrodia elata	46.760
	SRR5643515	five period of Gastrodia elata	42.240
	SRR5643524	five period of Gastrodia elata	47.000
	SRR5643525	five period of Gastrodia elata	35.430
	SRR5643528	five period of Gastrodia elata	40.400
	SRR5643658	five period of Gastrodia elata	39.620
	SRR5643659	five period of Gastrodia elata	35.380
	SRR5643660	five period of Gastrodia elata	35.560
	SRR5643661	five period of Gastrodia elata	38.030
	SRR5643662	five period of Gastrodia elata	42.080
	SRR5643663	five period of Gastrodia elata	40.940
	SRR5643664	five period of Gastrodia elata	44.470
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	42.480
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	59.320
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	46.600
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	45.270
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	43.880
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	54.890
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	44.550
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	42.850
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	43.260
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	44.140
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	52.690
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	52.690
SRP279888	Gastro	Gastrodia elata tuber	54.69
	Juven	Juvenile tuber	50.45
	Mother_Gastro	Mother tuber of Gastrodia elata	62.89
	Mother_Juven	Mother tuber of Juvenile	69.90