Detail information of GWHGAAEX007288/evm.TU.scaffold_2.72
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|743862581|ref|XP_010943572.1| | 0 | PREDICTED: transcription factor HBP-1b(c38)-like [Elaeis guineensis] |
| Swissprot | tr|O24160|TGA21_TOBAC | 2.00E-126 | TGACG-sequence-specific DNA-binding protein TGA-2.1 |
| trEMBL | tr|A0A061EYD6|A0A061EYD6_THECC | 0 | BZIP transcription factor family protein {ECO:0000313|EMBL:EOY09442.1} |
| TAIR | AT5G06840 | 4.00E-154 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000010 | 2887316 | 2897642 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007288
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00170.20 | bZIP_1 | 132 | 172 | 2.30E-08 |
| PF14144.5 | DOG1 | 223 | 297 | 6.00E-32 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bZIP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14431 | TGA | Plant hormone signal transduction | map04075 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006351 | Biological Process | transcription, DNA-templated |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.570 |
| SRR2545915 | Juvenile tuber | 8.910 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.300 |
| SRR5643514 | five period of Gastrodia elata | 0.890 | |
| SRR5643515 | five period of Gastrodia elata | 1.060 | |
| SRR5643524 | five period of Gastrodia elata | 1.220 | |
| SRR5643525 | five period of Gastrodia elata | 0.050 | |
| SRR5643528 | five period of Gastrodia elata | 0.170 | |
| SRR5643658 | five period of Gastrodia elata | 0.040 | |
| SRR5643659 | five period of Gastrodia elata | 0.830 | |
| SRR5643660 | five period of Gastrodia elata | 1.360 | |
| SRR5643661 | five period of Gastrodia elata | 1.340 | |
| SRR5643662 | five period of Gastrodia elata | 1.260 | |
| SRR5643663 | five period of Gastrodia elata | 0.460 | |
| SRR5643664 | five period of Gastrodia elata | 0.660 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.970 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.220 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.450 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.430 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.230 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.440 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.170 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.310 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.820 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.290 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.160 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.160 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.44 |
| Juven | Juvenile tuber | 3.22 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.78 | |
| Mother_Juven | Mother tuber of Juvenile | 44.09 |