Gene detail

Detail information of GWHGAAEX007289/evm.TU.scaffold_2.73

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|427712514\|ref\|YP_007061138.1\|	3.00E-21	hypothetical protein Syn6312_1425 [Synechococcus sp. PCC 6312]
KOG	KOG1839	0	Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3
nr	gi\|743862623\|ref\|XP_010943583.1\|	0	PREDICTED: clustered mitochondria protein isoform X1 [Elaeis guineensis]
Swissprot	tr\|F4J5S1\|CLU_ARATH	0	Clustered mitochondria protein
trEMBL	tr\|B9RHH9\|B9RHH9_RICCO	0	Clustered mitochondria protein homolog {ECO:0000256\|HAMAP-Rule:MF_03013}
TAIR	AT3G52140	0	tetratricopeptide repeat (TPR)-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	2904997	2973148	-

Transcript Sequence
>GWHTAAEX007289 GGGTGGCATGTATGAGTTGTTTCCCTCAAAAAATGTTGGGGTTCACTAAGAAATACAAAGAGAGCCATTTCAGTCTCCTAAAGGCCGCTCATTTTCCATCTTCAGCCGCCACAATATCCACCTCTCTTCTCTTCCCCGAACATCTCACCCTCCATTTGCCCGCACAGGTATCTTTGTTTCTCATTCTTTAGCTTCCCTGTTTCTCGAAGAATAATTTGTCTGCTTTTGTGTGACGCCATTTGTTCTCTGAATCTCACTTTCAATAAGGAGAATACATCGGCTCTCATAAACAAAATACTGGATTAGCTTCGCTTGTTTTTTTCGAGTGTGGTACTGTTATTAGGATTGGAAAATGGCTGGAAAAGCTAACAAGGCGAAGAGCAGGGGGAAATCGCTTCATCGGAGTTCTACTGAATCTTCGGAACCGCTTACTTCAAAAGGGGAAGGTACTGTTTCTCCGGATTCTGCTAATAATGATGCTCCCGATGTCAATGCCAACGTTGATAATAAAGCTGAAAATGATAAGGAGGTGCCTGCCAGTGCTCCTGAAGCAGCACCAACAAAACCAGAAGAATCTCGCTTGTATCCTGTTTCTGTCAGGACGTCATCAGGGGAAAAGCTAGAATTGCAGCTAAGCCCCGGAGATTCTGTAATGGACATTAGACAATTTTTACTTGATGCTCCAGAGGCTTGCTTCTATACTTGCTATGACTTGTTTCTGCATGCTAGTGATGGCTCATCTCACCAGTTAGGGGATTATAGTGAAATCTCTGAAGTTGCGGACATTTCCACTGGTGGATACTCCTTGGAGATGTTTGTAGCTCTGTATGATGATAGATCTATAAGATCACATGTTCGCCGTACTCGTGATCTGATTTCTCTTTCCAATCATCATACATCATTATCAACATTACTGGCCTTGCAACATGAACCTTCCCATCAAAAGCCTTCAGATGCTGTTAAAATGGATTCTTTAGAGTCAGATTGTTTAGGCTTCATGGATGATGTTGCTTGTTCTGTTGGCAATTTATTGGTGTCGTCACTGAAGAATATTAAATGCGTAGAGAGCATAACTTTTTCTTCTTTTAATCCTCCTCCGAGCTATAGGCGACTAGTTGGAGATTTGATTTACTTGGACATTAAAATTCTCGAAGGAACCGAACTTTGCATAAGCGGAACAACAAAAGGTTTCTATGTTAATACAAGCACAGGAAATATATTAGATCCAAAACTATCTAAGACAACATATGAGGCTAGCACTTTAGTTGGTTTGCTTCAGAAGATAAGCCCTAAATTCAAAAAAGCTTTTCGTGAAGTTTTAGAGCTAAAAGCTTCTGGACATCCGTTTGAAAATGTTCAGTCATTGTTGCCACCAAACACCTGGTTGGGAGTTCATCCAGTTCCAGATCACCTCAGAGATGCAGCTAGAGCAGAAGATGCCTTGTCTCCTTCTTATGGGACTGAGTTAGTTGGAATGCAGAGGGATTGGAATGAGGAATTACAGTCTTGTAGGGAGTTTCCAAATAAGAGTCTCCAGGAAAGGATCTTACGAGACAGGGCGCTATATAAAGTGGCTTGTGATTTTGTTGATGCAGCAACTAATGGTGCAATTGGAGTCATAAATCGATGCATTCCTCCTATTAATCCTACTGATCCAGAGTGTTTCCATATGTATGTACACAACAACATATTCTTTAGCTTTGCTGTGGATGCTGACCTCGGATTTATATCAAAGGATCTGATGCCAAGTACTGACCTTAATATCATTGATGATGTTGGTGATACCAAGCTGTCAAGTAATACAATAACTGAAAGTTGCAGCGACTCATATCATGGAAAGGGCAAAGACTTGAGCTCCACAGCTTTGGGCGCGAATACCGGAATTCAGACTGTTTTAGATAGTAATCCTGGAGCTAGAACTGAGGCGTTCATAGCTGAAAGTGAACAAGCAACGTATGCTTCTGCTAATAATGATTTGAAAGGAACCAGAGCATACCAAGAAGCTGACGTTCCTGGACTCTTTAATCTTTCGATGGCAATAGTTGATTACAGAGGCTATAGAGTAGTTGGACAGAGCATTATACCTGGGATCCTTCAAGGGGACAAGTCAGACTCCCTTTTATATGGATCTGTTGACAACGGAAAGAAAATCTGTTGGAATGAATCATTTCACTCCAAGGTTCTGGAAGCTGCAAAGCGGCTCCATCTGAAAGAACATACAGTTTTAGATGGCTCTGGGAATGCTGTCAAATTAGCTGCTCCAGTTGAATGTAAAGGCATTGTTGGAAGTGATGATAGGCATTATCTCTTGGACTTGATGAGGGTAACACCTCGTGATGTTAATTACACTGGACCTGGATCACGATTCTGTGTGTTGAGGCCTGAACTTGTAAATACCTTTTGTGAGAAAGTTGATTCTGGAGTACGGTCAGGCCCACAAACTGGAAATGAATCTCTTGCATCAGCTGATCCACCATGTGCTGATGATAGGGAGATTTCAAAGGAAGATATTAAGGATGATAAAAATTCAGATTTTGTTACTTCTGAAGGTTGCACATCATCTGGAGAAATTTTCTTAAATCCAAATGTTTTTACTGATTTTAAGCTGGCAGGGACTGTGGAGGATATTGCTGCTGATGAGGCAGTAGTGAGAAAGGTAGGTTCATATCTCGTGGATACTGTTCTTCATAAATTTGTGGATGATGTTTGTTCCTTGGATATTTCACCTATGGATGGTCAAACATTAACTGATGCGCTTCATGCTCATGGGATTAATGTCCGTTATCTTGGAAGAGTAGCTAATATGACCAAGCATTTACCTCATGTTTGGGATCTATGCACCACAGAGATCATTGTTCGATCAACTAAACATATCCTGAAGGATGAATTAAGGGAAGCCCAAGACCATGATATCAGTTCAACCATTTCACATTTCTTTAATTGCTTTTTTGGGCTTGTTTCTGTTGAAACCAAAAATAGCTCCAATAGCCCACAGGTAAAGGCTCAAAAAAAGGATCAGGCGTGGCATCACCTATCTAAAAACATCATTAAGGGGCAATCAAAATTGAGCCATGGCGCCTCCTTTAGAAAAGTTCAATCCCCACAAACACATTTAAACTCTGAAGAACTTTGGACTTCCATTCAGGAATTTGCAAAATTTAAGTACCAGTTTGAATTTCCTGATGATGTGAGATTACGTGTTAAAAAAGTATCAGTTATTCGAAATTTGTGCCAAAAGGTTGGAATAACAATCGCTGCACGCAAATACGATCTTGACACAGGTTCACCCTTTCAAATTTCAGACATACTTAATCTGGTACCCGTTGTCAAGCACTCTGTTCCATTGTGTTTGGAGGCTAAGAATCTAGCTGAAGCAGGAAAAGGTCGATTATCAGAGGGAAACCTAAATGAGGCATATGCTCTTTTTTCCGAAGCATTTTCAGTACTTCAGCAGGTTACAGGTCCTATGCACAGAGAGGTTGCCAATTGTTGTCGGTACCTTGCAATGGTTCTATATCATGCAGGTGACATGAAAGGAGCAATCACACAGCAACATAAGGAGTTAATTATAAATGAACGGTGTCTTGGTCTTGATCACCCTGACACTGCACACAGCTATGGAAATATGGCATTATTTTATCATGGCCTTAATCAGACTCAACTAGCTCTGAAACATATGTCTCGAACACTGCTTCTCCTTGGTCTCTCTTCAGGGCCTGACCATCCAGATATTGCAGCAACCTTCATAAATGTTGCCATGATGTACCAAGATCTTGGGAAGATGGATACCGCACTTCGATATTTGCAAGAAGCATTGAAGAAGAACGAGCGCCTCCTTGGCTCAGATCATATCCAAACTGCGGTTTGCTATCATGCACTCGCCATTGCTTTCAACTATATGGGTGCCTACAAACTTTCTATTCAGCATGAAAATAAAACTTATGATATACTGGTTAAACAACTTGGGGAAAATGATTCCAGAGTGCGTGATTCTGACAATTGGATAAAGACATTCAAATTACGCGAGGCACAGGCTAATGCGCAGAAGCAAAAAGGACAGGCGGTTAATTCATCATCTGCTCAGAAAGCCATTGATATCTTGAAGGCGAATCCCAGCCTGATTCAAGCATTCCAGGCTGCTGGGGGTGGATTAAATCCTTCATCTATTGATAGATCCATCAATGCAGCACTTGTTGGGGAGGGCTTTGCTCGAGGTAGAGGGATTGATGAACGGGCAGCTAAAGCGGCTGCTGAAGCTCGCAAAAAGGCCGCAGCTCGTGGCCTCCTCAACCGCCCAAGTGGCGTTCCTGTTCAGACGGTGCCGTGGAACCAATTCCTCAGCATTCTCAACAGCTCCGCTGTTGCACAGCCCAACTCCCAATCAATCGAAATCAATGCTTCTAATGGTGCTGCCGAAGAACCTCCTGCTGGCCTCGGCGTTGGACTGGTCTCATTGAACCCTAAGAAACAGAAGCCCAAACCTAAGTCTCAAGCCTGAAGCAGTGAAATTCAACTCACAGAATATGCATTATTTTTGATGGCTGCAGGCTGCATGCAAATTGAGTGCAGGAGCCAATTCAGGTATAGATATATCAAGCCTTTTTTGTTAGATATTCGTACTTTGATTCATGAATAAGGTGCTGCGTGAGTTTTTTATTTTAAATTCCGAAAGACGAGGAATGATTTATGCGCCTAAGTTGGGATGCCTATATTGCTATACAAAAGCATTTGTTTTTGTTATTCTTGGGCTATGAGAAACATGTCTTGTAATCTGCTTGTTTGTTGCTTAAGAATCTGTAAATTTTGGTCTACTCAGTGTCTTTAACTGCATCTTTTCTGCAGTGTCCTTGTGTGTTGTATCATAAGCTGTGAGAAAATGGGTGGGTACGACGATACACATTCAAATATAGAAGCTGTTTATAGTTTCTCTTTTAGTATTTTTTCTTGATTTATTATTATTATTATTATCATT

Network for GWHGAAEX007289

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF15044.5	CLU_N	97	175	1.30E-19
PF05303.11	DUF727	257	323	8.00E-07
PF13236.5	CLU	378	665	1.30E-83
PF12807.6	eIF3_p135	790	974	5.70E-49
PF13424.5	TPR_12	1050	1112	2.50E-08
PF13424.5	TPR_12	1126	1199	6.10E-14

Protein Sequence

>GWHPAAEX007289
MAGKANKAKSRGKSLHRSSTESSEPLTSKGEGTVSPDSANNDAPDVNANVDNKAENDKEVPASAPEAAPTKPEESRLYPVSVRTSSGEKLELQLSPGDSVMDIRQFLLDAPEACFYTCYDLFLHASDGSSHQLGDYSEISEVADISTGGYSLEMFVALYDDRSIRSHVRRTRDLISLSNHHTSLSTLLALQHEPSHQKPSDAVKMDSLESDCLGFMDDVACSVGNLLVSSLKNIKCVESITFSSFNPPPSYRRLVGDLIYLDIKILEGTELCISGTTKGFYVNTSTGNILDPKLSKTTYEASTLVGLLQKISPKFKKAFREVLELKASGHPFENVQSLLPPNTWLGVHPVPDHLRDAARAEDALSPSYGTELVGMQRDWNEELQSCREFPNKSLQERILRDRALYKVACDFVDAATNGAIGVINRCIPPINPTDPECFHMYVHNNIFFSFAVDADLGFISKDLMPSTDLNIIDDVGDTKLSSNTITESCSDSYHGKGKDLSSTALGANTGIQTVLDSNPGARTEAFIAESEQATYASANNDLKGTRAYQEADVPGLFNLSMAIVDYRGYRVVGQSIIPGILQGDKSDSLLYGSVDNGKKICWNESFHSKVLEAAKRLHLKEHTVLDGSGNAVKLAAPVECKGIVGSDDRHYLLDLMRVTPRDVNYTGPGSRFCVLRPELVNTFCEKVDSGVRSGPQTGNESLASADPPCADDREISKEDIKDDKNSDFVTSEGCTSSGEIFLNPNVFTDFKLAGTVEDIAADEAVVRKVGSYLVDTVLHKFVDDVCSLDISPMDGQTLTDALHAHGINVRYLGRVANMTKHLPHVWDLCTTEIIVRSTKHILKDELREAQDHDISSTISHFFNCFFGLVSVETKNSSNSPQVKAQKKDQAWHHLSKNIIKGQSKLSHGASFRKVQSPQTHLNSEELWTSIQEFAKFKYQFEFPDDVRLRVKKVSVIRNLCQKVGITIAARKYDLDTGSPFQISDILNLVPVVKHSVPLCLEAKNLAEAGKGRLSEGNLNEAYALFSEAFSVLQQVTGPMHREVANCCRYLAMVLYHAGDMKGAITQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTQLALKHMSRTLLLLGLSSGPDHPDIAATFINVAMMYQDLGKMDTALRYLQEALKKNERLLGSDHIQTAVCYHALAIAFNYMGAYKLSIQHENKTYDILVKQLGENDSRVRDSDNWIKTFKLREAQANAQKQKGQAVNSSSAQKAIDILKANPSLIQAFQAAGGGLNPSSIDRSINAALVGEGFARGRGIDERAAKAAAEARKKAAARGLLNRPSGVPVQTVPWNQFLSILNSSAVAQPNSQSIEINASNGAAEEPPAGLGVGLVSLNPKKQKPKPKSQA

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	31.580
SRP064423	SRR2545915	Juvenile tuber	32.070
SRP108465	SRR5643513	five period of Gastrodia elata	24.350
	SRR5643514	five period of Gastrodia elata	25.690
	SRR5643515	five period of Gastrodia elata	25.370
	SRR5643524	five period of Gastrodia elata	27.140
	SRR5643525	five period of Gastrodia elata	15.860
	SRR5643528	five period of Gastrodia elata	16.670
	SRR5643658	five period of Gastrodia elata	14.410
	SRR5643659	five period of Gastrodia elata	35.780
	SRR5643660	five period of Gastrodia elata	34.240
	SRR5643661	five period of Gastrodia elata	34.000
	SRR5643662	five period of Gastrodia elata	30.410
	SRR5643663	five period of Gastrodia elata	32.930
	SRR5643664	five period of Gastrodia elata	30.320
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	27.370
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	26.760
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	30.660
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	24.740
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	24.360
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	25.660
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	28.520
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	25.420
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	35.440
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	36.740
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	35.280
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	35.280
SRP279888	Gastro	Gastrodia elata tuber	40.28
	Juven	Juvenile tuber	42.76
	Mother_Gastro	Mother tuber of Gastrodia elata	22.80
	Mother_Juven	Mother tuber of Juvenile	31.34