Detail information of GWHGAAEX007291/evm.TU.scaffold_2.76
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|94970658|ref|YP_592706.1| | 2.00E-59 | UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Koribacter versatilis Ellin345] |
| nr | gi|743767349|ref|XP_010913934.1| | 0 | PREDICTED: uncharacterized protein LOC105039473 [Elaeis guineensis] |
| trEMBL | tr|A0A061EWE2|A0A061EWE2_THECC | 0 | Uncharacterized protein isoform 1 {ECO:0000313|EMBL:EOY09410.1} |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000010 | 3070274 | 3123985 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007291
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02826.18 | 2-Hacid_dh_C | 28 | 95 | 4.00E-07 |
| PF08245.11 | Mur_ligase_M | 144 | 330 | 2.30E-25 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008360 | Biological Process | regulation of cell shape |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0051301 | Biological Process | cell division |
| GO:0009058 | Biological Process | biosynthetic process |
| GO:0008764 | Molecular Function | UDP-N-acetylmuramoylalanine-D-glutamate ligase activity |
| GO:0016874 | Molecular Function | ligase activity |
| GO:0051287 | Molecular Function | NAD binding |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.920 |
| SRR2545915 | Juvenile tuber | 6.290 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.320 |
| SRR5643514 | five period of Gastrodia elata | 3.950 | |
| SRR5643515 | five period of Gastrodia elata | 2.950 | |
| SRR5643524 | five period of Gastrodia elata | 4.630 | |
| SRR5643525 | five period of Gastrodia elata | 0.410 | |
| SRR5643528 | five period of Gastrodia elata | 0.290 | |
| SRR5643658 | five period of Gastrodia elata | 0.500 | |
| SRR5643659 | five period of Gastrodia elata | 1.590 | |
| SRR5643660 | five period of Gastrodia elata | 0.840 | |
| SRR5643661 | five period of Gastrodia elata | 1.120 | |
| SRR5643662 | five period of Gastrodia elata | 0.420 | |
| SRR5643663 | five period of Gastrodia elata | 1.100 | |
| SRR5643664 | five period of Gastrodia elata | 0.200 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.660 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.960 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.550 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.470 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.500 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.020 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.610 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.350 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.560 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.570 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.570 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.21 |
| Juven | Juvenile tuber | 1.07 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.45 | |
| Mother_Juven | Mother tuber of Juvenile | 0.65 |