Detail information of GWHGAAEX007293/evm.TU.scaffold_2.78


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG33168.00E-86Transport protein particle (TRAPP) complex subunit
nrgi|659099689|ref|XP_008450728.1|6.38E-90PREDICTED: trafficking protein particle complex subunit 6B isoform X2 [Cucumis melo]
trEMBLtr|A0A0A0M1M8|A0A0A0M1M8_CUCSA1.00E-89Uncharacterized protein {ECO:0000313|EMBL:KGN66131.1}
TAIRAT3G050008.00E-86Transport protein particle (TRAPP) component

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001032115923226400-
Transcript Sequence

Network for GWHGAAEX007293

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04051.15TRAPP121621.20E-41
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0043087Biological Processregulation of GTPase activity
GO:0048193Biological ProcessGolgi vesicle transport

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms18.750
SRR2545915Juvenile tuber29.660
SRP108465SRR5643513five period of Gastrodia elata36.300
SRR5643514five period of Gastrodia elata35.200
SRR5643515five period of Gastrodia elata32.100
SRR5643524five period of Gastrodia elata40.100
SRR5643525five period of Gastrodia elata37.770
SRR5643528five period of Gastrodia elata29.160
SRR5643658five period of Gastrodia elata31.690
SRR5643659five period of Gastrodia elata30.840
SRR5643660five period of Gastrodia elata29.080
SRR5643661five period of Gastrodia elata28.490
SRR5643662five period of Gastrodia elata33.440
SRR5643663five period of Gastrodia elata28.690
SRR5643664five period of Gastrodia elata24.470
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_132.380
SRR6049655Rhizomagastrodiae_C368-T10_good_134.740
SRR6049656Rhizomagastrodiae_C368-T07_good_130.980
SRR6049657Rhizomagastrodiae_C368-T07_good_131.080
SRR6049658Rhizomagastrodiae_C368-T04_good_130.580
SRR6049659Rhizomagastrodiae_C368-T04_good_128.950
SRR6049660Rhizomagastrodiae_C368-T01_good_130.060
SRR6049661Rhizomagastrodiae_C368-T04_good_131.020
SRR6049662Rhizomagastrodiae_C368-T01_good_128.240
SRR6049663Rhizomagastrodiae_C368-T01_good_125.610
SRR6049664Rhizomagastrodiae_C368-T10_good_131.730
SRR6049665Rhizomagastrodiae_C368-T10_good_131.730
SRP279888GastroGastrodia elata tuber 39.23
JuvenJuvenile tuber79.62
Mother_GastroMother tuber of Gastrodia elata 34.15
Mother_JuvenMother tuber of Juvenile 48.73