Detail information of GWHGAAEX007298/evm.TU.scaffold_2.84
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 7.00E-41 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|743810443|ref|XP_010928900.1| | 0 | PREDICTED: receptor-like protein kinase BRI1-like 3 [Elaeis guineensis] |
| Swissprot | tr|Q9ZWC8|BRL1_ARATH | 0 | Serine/threonine-protein kinase BRI1-like 1 (Precursor) |
| trEMBL | tr|K3ZQ47|K3ZQ47_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si028727m} |
| TAIR | AT1G55610 | 0 | BRI1 like |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000010 | 3531970 | 3536594 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007298
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 21 | 61 | 6.10E-09 |
| PF13516.5 | LRR_6 | 161 | 177 | 0.05 |
| PF13516.5 | LRR_6 | 260 | 278 | 1.7 |
| PF13855.5 | LRR_8 | 313 | 373 | 1.10E-06 |
| PF13516.5 | LRR_6 | 385 | 401 | 0.76 |
| PF13855.5 | LRR_8 | 678 | 734 | 2.40E-09 |
| PF00069.24 | Pkinase | 903 | 1169 | 9.00E-45 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-Xb-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.080 |
| SRR2545915 | Juvenile tuber | 7.830 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 19.240 |
| SRR5643514 | five period of Gastrodia elata | 16.000 | |
| SRR5643515 | five period of Gastrodia elata | 17.280 | |
| SRR5643524 | five period of Gastrodia elata | 20.200 | |
| SRR5643525 | five period of Gastrodia elata | 66.230 | |
| SRR5643528 | five period of Gastrodia elata | 68.030 | |
| SRR5643658 | five period of Gastrodia elata | 45.070 | |
| SRR5643659 | five period of Gastrodia elata | 11.590 | |
| SRR5643660 | five period of Gastrodia elata | 9.850 | |
| SRR5643661 | five period of Gastrodia elata | 13.220 | |
| SRR5643662 | five period of Gastrodia elata | 12.750 | |
| SRR5643663 | five period of Gastrodia elata | 9.340 | |
| SRR5643664 | five period of Gastrodia elata | 23.060 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 18.590 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 21.180 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.970 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.550 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 19.890 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 22.770 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.650 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 27.030 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 20.830 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 19.480 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.450 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.450 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.71 |
| Juven | Juvenile tuber | 17.59 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 123.75 | |
| Mother_Juven | Mother tuber of Juvenile | 80.61 |