Gene detail

Detail information of GWHGAAEX007308/evm.TU.scaffold_2.106

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|521462574\|ref\|YP_008149444.1\|	7.00E-33	hypothetical protein SCE1572_15050 [Sorangium cellulosum So0157-2]
KOG	KOG0061	0	Transporter, ABC superfamily (Breast cancer resistance protein)
nr	gi\|743781088\|ref\|XP_010920754.1\|	0	PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 6-like [Elaeis guineensis]
Swissprot	tr\|Q9M2V7\|AB16G_ARATH	0	ABC transporter G family member 16
trEMBL	tr\|A0A061FM62\|A0A061FM62_THECC	0	ABC-2 type transporter family protein {ECO:0000313\|EMBL:EOY18415.1}
TAIR	AT3G55090	0	ABC-2 type transporter family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	4470318	4475607	-

Transcript Sequence
>GWHTAAEX007308 CTTTAGGATATTTTTTATCAGAAATATTTTCGAATCCCATATTAGATATCTGCCCGTCGAAAAGGAAAAAGGATTCAGATAAACACCTACACCTAATCCTTCCTCTCCTCTCTGGCACGCTTCGCACGCTTGTGTGCAAACAGTGGCACGAGTGGTAGGAAGCGTAGCTCACCACCATCACTCGTCCGGATATATATATTTAGAAGGAATTGCAATCAGCGTCAGCCATACCTTGTTTGCTTACCATAATAAGAAACCGGCTCGGGCGATATAAATCGGCTCGGATGTCGCGGTTCGTCCAGAGGCTCCCTTTCTTGGATCGGCGGTCCGGCCCGATGGAGGACCAGGCGGAGGAGACGGGCCGGAACGGACTGCTGCAGTCCCAGACGCTGGGCCAGCTGCTGAAGCGGGTCGGCGACGCCGCCGCAACTGCCGACCATCAGGTGGTGGACCTGGACGAGCTTATGGGAGGGCCGCGGGGTTCCGACCCGGGCCCGACCATTCCCTTCGTGCTCTCCTTTAGCGAGCTTAGTTACAGCGTCAAGGCTTCCCAGAAGCTGTCCGTTTTGCCATGGAGCCGAAGACCCGCTTCCTTCAACACCAAGACTCTTCTGGACTCCATCTCAGGTGAGGCGAAGGAAGGGGAGATAATGGGGGTGCTGGGGGCGAGCGGGTCGGGAAAATCAACACTGATCGACGCGCTGGCGAACCGGATATCGAAGGATAGCCTGAGGGGAGCCATCAAGCTGAACGGCGAGGCGGTAGATTCGAAGCTTCTGAAGGCGATATCCGCGCACGTGATGCAGGACGATCTGCTGTACCCCATGCTGACGGTGGAGGAGACGCTGATGTACGCGGCGGAGTTCCGGCTGCCACGTGCTCTGTCCCGGTCGAAAAAAAAGAGCCGGGTTCAGGCAATGATGGACCAGCTGGGCCTGCGGCGGGCAGCCAGGACCATAATAGGTGACGAGGGCCACAGAGGGGTGTCCGGGGGAGAGCGCAGGCGGGTATCCATCGGCATCGACATTGTGCACGACCCCATCATCCTGTTTCTAGACGAGCCCACCTCCGGCCTCGACTCCACCAGCGCCTTCATGCTGGTCAAGGTCCTCCGGCGCATCGCCTCCACCGGCAGCATTGTCGTCATGTCCGTCCACCAGCCCTCCTCCAGGATACTCAGCCTTCTGGACCGGGTGGTGCTTCTGAGCCGGGGTCAGACCGTCTACAGCGGCAGTCCGGATTCCCTCCCGCTTTACTTCTCCGAATTCGGGAACCCCATCCCGGAAAACGAGAACCGGGCCGAGTTCGCCCTGGACTTCATCCGCGAGCTGGAGCTGACCCCGGCCGGAACCAAGCCGTTGGTCGAGTTTCACCGCAAGTGGCAGTCCCTCAGCCCCTCACTCGCCAAAGACCCTTGCCCTCTCTCCCTCAAGGACGCCATCAGCGCCAGCATCTCACGAGGCAAGCTTGTGTCCGGCGCTACCAACGTCAGCGCCTCCGCTGCCGCCCAAGGCTTCGCCAACCCCTTCTGGATAGAGATCGTCGTGCTCACCAAGCGCGCCGCCACCAACTCAAAGCGCATGCCCGAGCTCCTCGGAGTCCGCCTCGCCGCTGTTCTCGTCACCGGCTTTATTCTCGCTACCATCTTCTGGAGGCTCGACGACTCCCCCAAAGGCGTCCAGGAACGGCTGGGTTTCTTCGCCATTGCGATGTCAACGATGTTCTACACGTGCGCGGATGCGCTGCCGGTGTTCCTGCAGGAGCGGTACATCTTCGTGCGGGAGACGGCCCACAACGCGTACCGGAGGTCGTCGTACGTGGTCTCGAACGCAGCGGCGAGCTTCCCTCCGCTGGTGTTTCTCTCGGGGGCCTTCGCGGCAACCACCTTCTTCGCTGTGGGCCTCTCCGGCGGGGCGGCGGGCTTCGGATTCTTCTTCCTGATCGTGCTGGCGTCCTTCTGGGCGGGCAGCGGCTTCGTTACCTTCCTCTCCGGGGTGGTCTCCCACGTGATGCTTGGCTACACCATGGTGGTGGCCATCCTGGCCTACTTCCTCCTCTTCAGCGGCTTCTTCATAACCCGCGGCAGGATCCCTGGCTACTGGATCTGGTTCCACTACTTCTCCCTCATCAAGTATCCATATGAGGCCGTGCTGCAGAACGAATTCGACGATCCCGGGAGGTGCTTTGCCAGGGGCCTGCAGATGTTCGACGCCACTCCGCTCGCCCCCCTCCCACACGACCTCAAGCTGCGCGTTCTCGATGCCATGAGTGCCGCCCTCGGCGGCAGCCTCACCAACACCACCTGCATCGCCACCGGCGCCGACGTTCTGGGCCAGCAGGGCGCCACCGACCTCACCAAGTGGAACTGCCTCTGGATCACCCTCGCTTGGGGATTCCTCTTCAGGATCCTCTTCTACTTCGCTTTGCTCGCTAACAGCAACAACAAGCGCAGATAGATAGCTCTCTGTGCCGACCGTGTACATGCTTGATTCAAGATTCTAAGTCTTTACTCAACTTAATTAATAATTAAACGATACGTTTGGCATATTATTATCCACAGCTTTTGGCCCTTTGATCACACTTAGATATTGATTAAGGCATCATTGGTTGAAGTCTTTGATTAGACTTAACTTTTAACCCAAGAGCTCAATTGCTGTGCCTGTACATGCATAATTCGAAATCAAAAGTGTTTAATCAAATTAAACGATATAGCTTATTGGCATATTATTCGCAGCTTTTAACTCTTGTTGGTTCTAGATCAGACTTATCCAACCAAAGGAGCTCCTTTACAAACTGAAGTAATTATAAGAATCATGGCATATAGCCAACATTGAGCCTTATTGTAGAGATTCTTGTTGATCAAGGAGATGTTTTGGAGGCGCGCCACAACGCCTGGTCGCCGAGAGGCGGGTGTCATATGGCGCCGCAGTGCTTGGGAGCCCGAGAGTAGGGCGCCACAGCTTGTCGTGGCGCCCACGGCTCAGCTGGCATAAATTTGAGCTGCATATAAATATTCTTTAACCCTTTTAAGGTTTGAGAGTTGAAAAATCCAAAAATCTAACAGCCTCCATTAAGGTAGTGAGTGTAGAGGCTGCTCCATCAAAGAATACGAAGGCTCTTAAGGATTTGTTAACCTTAAATCAATGTAACCTCCTATATATAGTGAAACTTCTTTGTTTTTCTCCCCGTGGATATAGATGTTAGCACTGAACTATATAAATCTCTTGCTTTGTGTTGTGAT

Network for GWHGAAEX007308

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00005.26	ABC_tran	110	262	8.50E-24
PF01061.23	ABC2_membrane	419	627	2.80E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016887	Molecular Function	ATPase activity
GO:0005524	Molecular Function	ATP binding
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.910
SRP064423	SRR2545915	Juvenile tuber	12.860
SRP108465	SRR5643513	five period of Gastrodia elata	22.450
	SRR5643514	five period of Gastrodia elata	7.050
	SRR5643515	five period of Gastrodia elata	16.920
	SRR5643524	five period of Gastrodia elata	10.110
	SRR5643525	five period of Gastrodia elata	12.600
	SRR5643528	five period of Gastrodia elata	14.560
	SRR5643658	five period of Gastrodia elata	7.700
	SRR5643659	five period of Gastrodia elata	16.320
	SRR5643660	five period of Gastrodia elata	14.960
	SRR5643661	five period of Gastrodia elata	24.480
	SRR5643662	five period of Gastrodia elata	25.070
	SRR5643663	five period of Gastrodia elata	15.050
	SRR5643664	five period of Gastrodia elata	9.820
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.290
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.840
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.930
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.130
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	15.010
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	14.530
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.690
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	21.810
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.220
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.650
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.790
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.790
SRP279888	Gastro	Gastrodia elata tuber	16.45
	Juven	Juvenile tuber	8.41
	Mother_Gastro	Mother tuber of Gastrodia elata	130.48
	Mother_Juven	Mother tuber of Juvenile	85.58