Gene detail

Detail information of GWHGAAEX007309/evm.TU.scaffold_2.110

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2259	4.00E-65	Uncharacterized conserved protein
nr	gi\|743781086\|ref\|XP_010920753.1\|	0	PREDICTED: uncharacterized protein LOC105044517 [Elaeis guineensis]
Swissprot	tr\|Q8VZA0\|SIEL_ARATH	3.00E-102	Protein SIEL {ECO:0000303\|PubMed:21924907}
trEMBL	tr\|M0T791\|M0T791_MUSAM	1.00E-179	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P15430_001}
TAIR	AT3G08800	4.00E-65	ARM repeat superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	4572081	4603397	+

Transcript Sequence
>GWHTAAEX007309 ATGGAGGCTCATCTTCTCGGGCAGGTTAGTCTCCACCTTTACAATCCCTCCGACCCCCAAGCCCTCCTCCGAGCCCTCGGATCCGCCAAGGCACTACTCGTAAACCCTAATTCCTCCGACACCACCCGCCGCGCCATTGTCGACGCTCTAAGCAGCATGCTTCGCTGTTCCAATGGCGATTTCACCTTTCTCCGCTACGCCATCAAACTCCTCGGCGACGTTGCAGCTCTGCACGGAGTTTTCTCCCGCTCTATCATCGAGCTCTTTCAGCGTTTCCTCAACGGTGACAAAAAGCTCGCAGCAGGCGCCCTTTCGGTGCTCAGTTCAGTGAATGGTTTCTTACTGAACGAGGATCTTGCGCTTTCGCTTGCGTCGAGCCAGCTTGTCTCAGCCAGATCGATGCTTGTTAAGTTGCTAGTTTCGAGTTTGGAAGGGGATAAGAGAAATATTTTGGTTATGAAACCGCATGCCGTGATTCGAGCTTTGCTTGGGCTCTCAGAGGATCTCTATCCATTGATAAAGGCAAAAGCAGTCGATGGACTTGTTTCAGTGTGCTGGAAAACTGATTCTGGTGTTAGTCTTCGGCTTGCCAATCACTTCTATAATTGTGCTGCATCATTTCTACGCAATGAAGAGGAACTAATTAGATTGTCTGCTACTAGATTGATTAGTGCATGCGGTCAACTTTTTGAGAGTAATAAAGGGGATGCACGTTATTGTGAGCTGATCAACGCTGGCTTTGTTTTACTTTGTGTAATGGCAAGAGATATGAATATGAAGGTGAGGGTCCAAGCCTTTTCTGCCCTTGGAAAAGCAAAGGGCGTCTCTGAGAACACGTTATTACAATCCTTGTCTAAGAAAATCTTAAGAACCTCAAATAAGGAAAACTTTCTTACTGAACCTACTTTGAGATATTCTAAATTTCCTCTCGCTTGTTCAGCAGGAGCATTTGTACATGGAATTGAAGATGAGTTCCTTGAGGTACGGCTGATTTCATGTAAGTCACTTGGGAACCTCAGCATTCTATCTGTTCAGTTTGCAGCTGCTGCACTAGATTTACTAATGGACTTAGTAAATGATGATGTGATGGCCGTTCGGCTCCAGACTTTGGAAACATTGTATCAAATGGCGGCAATTGGTTGTTTTATTATTCAGGAGAGACATGTACACATGTTTCTTGCTTTGTTAAGTGATATTAGCAGTGTAATTAGATTTGCCACGAGAAAACTCTTGCAATTAGTGAAGTTTCCTAAACTTGAGACGTTTAAAGCTACAATAAGCTCTCTTCTCACAAACATGGAGACACATCCAGAGGAAGAGGAAGATGTTTTCCTTATTTTGTTCTGCCTTGGTAGAAGTAATCCCAAGTTTGTTTTAAAGCTGGCAAAAGACTTTGTAGCACTGGTTGAACCATTCAGTGCAGGAGAACTAAGCTTGGACACTCCATCAGTGACTGGACATTTGGTGCTTATTGTCTCATCAACTTTTTCTGATAAGCAGAAAATTACTGATTTTCCTATTGCTCTGTTTTCTTATGCAGTTCCTTTAGCGGGTAGAATCTCCCGCTCGTTGGGAGGCTTTGTCAGCCAATACCAACTTTCAAATTATTTGTGCCAAATAAGTGGAATTCATTCTTCATTCGGAATACCTCTGTCCGAAGACACTGAATTAGCACCTATAAAAGTTGGGGAAGATCTAGCAAATTTCCTAAAGTTTAGAGAATGGCAATATAACTCACTCTCTCTTCATGATGAAAAATTAAAGAACTTGTTCAACTACGATAGACTAAACCTCTGTCAAGAGTCAACGTCCTGTGAACTCTCTCTTGAGGAAGGAAACGTTGATGCTAGCTTGACACGGCATATTAAGCTTATTTTGGGAAAAGTTCAAGATACTTGGTCTTTTATTCATTCAAACCGCTGTCTTGTTGCACGAAGGAAACTAAGGGATTGCAAGGAAGAATTAGATTTTATTAGTGTGGATATCAGTGAAGGAGCTGGAGCAGACTTTTCTGCATTTGGGCTGGTTTATGTGGAGGTTTTCATGTTGGTTGCTGAAATCTGGCATCAAATGCATGCAACAAGTTTTCATGTAACAGGAATGTCTGTATCAGATATTCTGATAGTAAAGTTAAATGCATCCCTTAGACAAATTAAATATTGTTTCGCTGGTTTTTCGATCGAGGAAGAATGCCATCTCTTAGAGCTCACCTTGCTTAGCGACGTCCTTCAACTTCACAAGTTTGGAATATGCTCGCTAGATGAGTTATCAAAAAAAATGCATGCAACTATTTCTCGTTTGCTACTCCTTTGTGAACAAGGATCAACTTCTTCTGATTTTATTGAAGAGGTAAAGAAGTTGTGTACAGAAGAGTGGACGAGTGAATCCTTTCCTGAATTTCCTGTTATCAAGTTGGTTCAACTGTTTTATCCTAGATTTGTATCATTCCAAGGAAAGTTCAGGCACATTAAAGCTGATTTGATGGTTCTTGGGCGTAGCTCTGAGTGCCCTCTTCGCTATGTTTCGGGGTTGCCTGTAGGCATCACATTCGATGTTGTTCTGCGCAATATCTTCCGAATGGAGAAAGTGTGGCTTCAAATGGCTGTTGGTGGTATATTTCAGCACATATTTGTAGATATCTGTAATTTTAAAGAATGTAATAACATTAGAAGGTGCACTTTGACTCTTCCATTTTATGAAACCCCGAGAACTACATCATTTGTTTTAAAGGCCTGCATATATTTGGAGCTCCCAGCTGAAGGTGTTCTGCATCGGAAGAAAGACATTCGAGGACCGAAACATGATAGCATTCAAATTTCTAAAGATATTGAAATTTATTTTGTCAGTGTTGAAAGCTATTATTATTGA

Network for GWHGAAEX007309

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.420
SRP064423	SRR2545915	Juvenile tuber	7.790
SRP108465	SRR5643513	five period of Gastrodia elata	4.370
	SRR5643514	five period of Gastrodia elata	4.080
	SRR5643515	five period of Gastrodia elata	4.290
	SRR5643524	five period of Gastrodia elata	4.360
	SRR5643525	five period of Gastrodia elata	4.480
	SRR5643528	five period of Gastrodia elata	4.450
	SRR5643658	five period of Gastrodia elata	3.730
	SRR5643659	five period of Gastrodia elata	5.600
	SRR5643660	five period of Gastrodia elata	7.540
	SRR5643661	five period of Gastrodia elata	6.830
	SRR5643662	five period of Gastrodia elata	7.230
	SRR5643663	five period of Gastrodia elata	6.530
	SRR5643664	five period of Gastrodia elata	7.810
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.380
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.150
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.480
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.450
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.550
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.160
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.650
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.260
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.180
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.790
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.030
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.030
SRP279888	Gastro	Gastrodia elata tuber	7.13
	Juven	Juvenile tuber	6.38
	Mother_Gastro	Mother tuber of Gastrodia elata	5.14
	Mother_Juven	Mother tuber of Juvenile	5.59