Detail information of GWHGAAEX007314/evm.TU.scaffold_2.115


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|372487665|ref|YP_005027230.1|2.00E-135isopropylmalate/homocitrate/citramalate synthase [Dechlorosoma suillum PS]
KOGKOG23680Hydroxymethylglutaryl-CoA lyase
nrgi|743881824|ref|XP_010909003.1|0PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like isoform X1 [Elaeis guineensis]
Swissprottr|O81027|HMGCL_ARATH0Hydroxymethylglutaryl-CoA lyase, mitochondrial
trEMBLtr|A0A067FWS3|A0A067FWS3_CITSI0Uncharacterized protein {ECO:0000313|EMBL:KDO71783.1}
TAIRAT2G268000Aldolase superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001046818034739303+
Transcript Sequence

Network for GWHGAAEX007314

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00682.18HMGL-like1534268.20E-52
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01640E4.1.3.4, HMGCL, hmgL Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Butanoate metabolismmap00650
Synthesis and degradation of ketone bodiesmap00072
Cysteine and methionine metabolismmap00270
Geraniol degradationmap00281
Peroxisomemap04146

Gene Ontology

GO term OntologyName
GO:0004419Molecular Functionhydroxymethylglutaryl-CoA lyase activity
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms35.970
SRR2545915Juvenile tuber23.630
SRP108465SRR5643513five period of Gastrodia elata31.080
SRR5643514five period of Gastrodia elata32.800
SRR5643515five period of Gastrodia elata29.520
SRR5643524five period of Gastrodia elata28.250
SRR5643525five period of Gastrodia elata66.080
SRR5643528five period of Gastrodia elata57.590
SRR5643658five period of Gastrodia elata83.070
SRR5643659five period of Gastrodia elata23.860
SRR5643660five period of Gastrodia elata33.500
SRR5643661five period of Gastrodia elata20.880
SRR5643662five period of Gastrodia elata30.830
SRR5643663five period of Gastrodia elata27.080
SRR5643664five period of Gastrodia elata28.100
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_132.870
SRR6049655Rhizomagastrodiae_C368-T10_good_117.460
SRR6049656Rhizomagastrodiae_C368-T07_good_127.710
SRR6049657Rhizomagastrodiae_C368-T07_good_144.520
SRR6049658Rhizomagastrodiae_C368-T04_good_134.120
SRR6049659Rhizomagastrodiae_C368-T04_good_134.490
SRR6049660Rhizomagastrodiae_C368-T01_good_129.920
SRR6049661Rhizomagastrodiae_C368-T04_good_130.580
SRR6049662Rhizomagastrodiae_C368-T01_good_119.750
SRR6049663Rhizomagastrodiae_C368-T01_good_117.440
SRR6049664Rhizomagastrodiae_C368-T10_good_122.560
SRR6049665Rhizomagastrodiae_C368-T10_good_122.560
SRP279888GastroGastrodia elata tuber 24.64
JuvenJuvenile tuber25.25
Mother_GastroMother tuber of Gastrodia elata 43.30
Mother_JuvenMother tuber of Juvenile 31.33