Detail information of GWHGAAEX007325/evm.TU.scaffold_2.134
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0443 | 0 | Actin regulatory proteins (gelsolin/villin family) |
| nr | gi|672165462|ref|XP_008802634.1| | 0 | PREDICTED: villin-2-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|O81644|VILI2_ARATH | 0 | Villin-2 {ECO:0000303|PubMed:10631247} |
| trEMBL | tr|Q9SQH4|Q9SQH4_LILLO | 0 | Actin bundling protein ABP135 {ECO:0000313|EMBL:AAD54660.1} |
| TAIR | AT2G41740 | 0 | villin 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000010 | 5830252 | 5893744 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007325
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00626.21 | Gelsolin | 29 | 110 | 9.10E-18 |
| PF00626.21 | Gelsolin | 148 | 216 | 1.30E-12 |
| PF00626.21 | Gelsolin | 267 | 336 | 2.90E-13 |
| PF00626.21 | Gelsolin | 408 | 485 | 3.70E-07 |
| PF00626.21 | Gelsolin | 533 | 583 | 1.40E-06 |
| PF00626.21 | Gelsolin | 639 | 712 | 3.50E-05 |
| PF02209.18 | VHP | 918 | 953 | 9.60E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0007010 | Biological Process | cytoskeleton organization |
| GO:0051015 | Molecular Function | actin filament binding |
| GO:0003779 | Molecular Function | actin binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 58.890 |
| SRR2545915 | Juvenile tuber | 69.370 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 51.420 |
| SRR5643514 | five period of Gastrodia elata | 39.980 | |
| SRR5643515 | five period of Gastrodia elata | 58.300 | |
| SRR5643524 | five period of Gastrodia elata | 40.140 | |
| SRR5643525 | five period of Gastrodia elata | 65.140 | |
| SRR5643528 | five period of Gastrodia elata | 66.970 | |
| SRR5643658 | five period of Gastrodia elata | 88.320 | |
| SRR5643659 | five period of Gastrodia elata | 64.520 | |
| SRR5643660 | five period of Gastrodia elata | 62.070 | |
| SRR5643661 | five period of Gastrodia elata | 56.170 | |
| SRR5643662 | five period of Gastrodia elata | 76.760 | |
| SRR5643663 | five period of Gastrodia elata | 70.220 | |
| SRR5643664 | five period of Gastrodia elata | 68.640 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 51.680 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 37.570 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 52.500 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 55.280 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 63.550 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 70.130 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 53.720 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 62.900 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 45.720 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 55.130 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 45.340 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 45.340 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 64.40 |
| Juven | Juvenile tuber | 45.94 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 60.65 | |
| Mother_Juven | Mother tuber of Juvenile | 53.18 |