Detail information of GWHGAAEX007338/evm.TU.scaffold_2.147
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|407452658|ref|YP_006724383.1| | 3.00E-135 | orotidine-5'-phosphate decarboxylase [Riemerella anatipestifer RA-CH-1] |
| KOG | KOG1377 | 0 | Uridine 5'- monophosphate synthase/orotate phosphoribosyltransferase |
| nr | gi|743845471|ref|XP_010938591.1| | 0 | PREDICTED: uridine 5'-monophosphate synthase isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q42586|UMPS_ARATH | 0 | Orotidine 5'-phosphate decarboxylase |
| trEMBL | tr|A0A0A0KNB1|A0A0A0KNB1_CUCSA | 0 | Uncharacterized protein {ECO:0000313|EMBL:KGN51120.1} |
| TAIR | HS4507835 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000010 | 6343421 | 6364360 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007338
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00156.26 | Pribosyltran | 49 | 164 | 4.80E-08 |
| PF00215.23 | OMPdecase | 249 | 468 | 4.50E-75 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13421 | UMPS | Metabolic pathways | map01100 |
| Pyrimidine metabolism | map00240 | ||
| Drug metabolism - other enzymes | map00983 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009116 | Biological Process | nucleoside metabolic process |
| GO:0044205 | Biological Process | 'de novo' UMP biosynthetic process |
| GO:0006207 | Biological Process | 'de novo' pyrimidine nucleobase biosynthetic process |
| GO:0006221 | Biological Process | pyrimidine nucleotide biosynthetic process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0004590 | Molecular Function | orotidine-5'-phosphate decarboxylase activity |
| GO:0004588 | Molecular Function | orotate phosphoribosyltransferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 21.320 |
| SRR2545915 | Juvenile tuber | 18.610 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 20.690 |
| SRR5643514 | five period of Gastrodia elata | 20.760 | |
| SRR5643515 | five period of Gastrodia elata | 21.050 | |
| SRR5643524 | five period of Gastrodia elata | 20.920 | |
| SRR5643525 | five period of Gastrodia elata | 28.600 | |
| SRR5643528 | five period of Gastrodia elata | 22.960 | |
| SRR5643658 | five period of Gastrodia elata | 28.910 | |
| SRR5643659 | five period of Gastrodia elata | 29.360 | |
| SRR5643660 | five period of Gastrodia elata | 29.300 | |
| SRR5643661 | five period of Gastrodia elata | 27.600 | |
| SRR5643662 | five period of Gastrodia elata | 23.900 | |
| SRR5643663 | five period of Gastrodia elata | 26.470 | |
| SRR5643664 | five period of Gastrodia elata | 22.960 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 25.240 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 26.340 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 26.630 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 26.440 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 28.570 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 28.580 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 29.550 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 29.610 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 29.240 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 29.680 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 30.760 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 30.760 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 24.68 |
| Juven | Juvenile tuber | 24.82 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 19.83 | |
| Mother_Juven | Mother tuber of Juvenile | 20.50 |