Gene detail

Detail information of GWHGAAEX007340/evm.TU.scaffold_2.152

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|257094183\|ref\|YP_003167824.1\|	1.00E-33	WD-40 repeat-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1]
KOG	KOG0284	0	Polyadenylation factor I complex, subunit PFS2
nr	gi\|695021073\|ref\|XP_009397612.1\|	0	PREDICTED: flowering time control protein FY isoform X1 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q6NLV4\|FY_ARATH	0	Flowering time control protein FY
trEMBL	tr\|M0ST50\|M0ST50_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P29380_001}
TAIR	AT5G13480	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	6530210	6584518	+

Transcript Sequence
>GWHTAAEX007340 CCTCAATCCCAAAAAATAATTGAAAGCCTTGGTTAAAAATATAATGGTCCTCGCTGTTTTATAGAATCCGACCCTCTTCTGTTTGCCCCGCTGAACCTTTAGTGCCAAATTGGCAGCGTCTGTTCCAAAAAAATATTGGCAGAGTCTTGCCTTCCTATTGAAATTAGGGCTAGGGTTTGGGAGCTCTTGGTGATGGCAATGATGTATGGAGAACAGCAGCAGGGACCTCCCATGCGGCAGCCCTCTGCTTCATCGAGTACGCTCGCGACAGACTACCCACAGGCGCACCCCCCTCCGTTCGACGCCCATGGAGATAGTTTTGCTGCTAAAAGAATGAGAAAGCTTGTTCAGAGGCGAGCTGTAGATTATACAAGTACTGTTGTGAGATATATTCAGGTTCGTACTTGGCAGCGAGATGCTGGAGACAGAACTGTGCTGCAGACTACTCCAGCTGCTGCTCTAGATATGTTACCAACTGTTGCTTATGCTGATAATCCATCAACTAGTTTTGCTGCTAAATTTGTTCATTCATCAACCAACAAGAATAAATGTTCTATCAATAGAGTTTTGTGGACTCCTACGGGGAGGCGTCTAATTACTGGGTCACAGAGTGGTGAATTTACACTTTGGAATGGACAGTCTTTTAATTTTGAAATGATTCTTCAGGCTCATGATCAAGCAATTAGGTCTATGGTGTGGAGCCACAATGAAAATTGGATGGTTACTGGTGATGATGGGGGCTCAATCAAATATTGGCAAAACAGTATGAACAATGTTAAATTAAACAAATCAGCACATAAAGAATCTGTTCGTGATTTAAGTTTTTCTAAAACTGATTTGAAGTTCTGCTCTTGCTCGGATGATACGTCAGTGAAGGTTTGGGACTTTGCAAGATGTCAGGAAGAGAGATCACTAACCGGCCATGGTTGGGATGTTAAGAGTGTTGATTGGCACCCAACAAAGTCATTACTTGTGTCAGGTGGAAAAGATAATCTTGTAAAACTGTGGGATGCCAAAACCGGGAGAGAACTCTGTTCATTTCATGGCCATAAAAACACTGTATTGTGTGTTAAGTGGAATCAAAATGGAAACTGGATTCTTACAGCATCCAAGGATCAAATCATTAAGCTTTATGACATTAGGTCCATGAAAGAACTTGAATCATTCCGAGGACACCGCAAGGATGTAACTGCTTTGGCTTGGCATCCATTTCATGAAGAATATTTTGTTAGTGGGAGTTTCGATGGATCCATCTTCCACTGGCTTGTAGGGCATGAGACTCCTCAGGTTGAGATAATTGGTGCACATGAAAACAGTGTGTGGGATCTTGCTTGGCACCCTATTGGCTATTTACTTTGCAGTGGCGGAAATGATCATGCTACAAGATTTTGGTGTAGAAATCGACCTGGAGATCAAGCCCGTGATAAATACAATGCCTTCCATACCCAAGGTTATGGTGATCAGAATCTTCTTGCCCCAGGGCGAGCAATGAGCGGCTTCCATATGCCTGAAGCCCCACCAACACCGGGAGCATTTGCTACAGGATTGCCTCGAAATGAAGGGACTATTCCTGGTATTGGAGTTGCAATGCCACTATCTGTTCAACTTGAAGGTTCTGATCAAGAGCAACGACCTCAGATTCCAGGAATTCCCCTCGGCGGGGCGCCTCCGCTTCCACCTGGCCCTCATCCATCCCTGTTGGCAGCTGGACAGCAACAAGCATATCAGCATGTTGCTCAACAAATGTCTCAACAGCAGCAGCAGCAGCACCCAGCATTTCCTCAGCAGATTGTCCCAATGGCTCTAGCACCTCCAAATATGAATCACATGCAGCCTCCAGCTCATATGCAACTCCTTCCGCATCATCTATCTCGACCACCACCACATCAAATGCCACCTCTGGGCATTTCTAGCAATATTCCGTCTTCCATGCCTGGTTCCATGTCTATACCTTCTGCTATGGGTTCATCAATGCCCAATCCTATGGTAATGCAAGGCTCAGCTGCTAATCAAATGATTCCTCAAACTCATATGATGGGCCTCAACCAAATTCAGCCAGGTGCAGTCCCTAATAACAACCTACAGCCAAACATGGGGGGCTTTGCAGGCGGCTTGGCAAACCTTCAGAATGTGCCGAATTCGGGGGTTCAGAATTTTCAACTGGGTGGATTGTTTAACAGACCTCAAGGTGGAATGATTGGCCCTATTCAGGGTTTGAGTGCTTTTCAGCCCGGAGTGATGGATGTGAGGACACCTGGAGTGGGCCACTCTGGGAATATAGGACTTCAGCCGCCGCCGCCTCTGCCTCAGGGCTCAGGACCACAGTGACTCACTTTATGTGCCTTTGGGGCGGAGTTTTCGACTGTTCTAGCTGCTGTTTGGTTTCTCGATTTCTTTAATTTTATGCTTATTTCATATTTTTGGTTTTTGGTTCTGCTGGCTTGTTTGTAAGTTGTAGCAAAATGTAAACTATAGGATTTGATGTAATTTAGAAGTATTTTACTATGTGGCAGTGGATGTTTGATAGCAATACTACTAGAATTGATTGAAGTAGGACATGAGCTTTATTCTTACATCAAATCTTTGGTGGTGCCGAAATTTGTCTTTAAAACAATATTTTGTGATGCTCAAGTCTGCTGTATTCTTCTTTTCAAGGATTCTAGCAAATGCTTACAAGTATATTGTTTCTAGTGAAATGTTATGCTGCCCAACCCTCACCCCAAAGTGCGATGCAGGCTCAATAGATTTCTC

Network for GWHGAAEX007340

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	155	188	0.0011
PF00400.31	WD40	200	231	0.00066
PF00400.31	WD40	236	273	1.10E-07
PF00400.31	WD40	278	315	9.90E-08
PF00400.31	WD40	321	357	0.00065
PF00400.31	WD40	368	400	0.0012

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K15542	PFS2	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	18.550
SRP064423	SRR2545915	Juvenile tuber	17.140
SRP108465	SRR5643513	five period of Gastrodia elata	17.140
	SRR5643514	five period of Gastrodia elata	16.300
	SRR5643515	five period of Gastrodia elata	16.730
	SRR5643524	five period of Gastrodia elata	15.250
	SRR5643525	five period of Gastrodia elata	17.610
	SRR5643528	five period of Gastrodia elata	15.680
	SRR5643658	five period of Gastrodia elata	15.580
	SRR5643659	five period of Gastrodia elata	17.540
	SRR5643660	five period of Gastrodia elata	18.960
	SRR5643661	five period of Gastrodia elata	19.360
	SRR5643662	five period of Gastrodia elata	18.360
	SRR5643663	five period of Gastrodia elata	18.340
	SRR5643664	five period of Gastrodia elata	17.860
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	16.410
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	17.560
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	15.080
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.430
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	19.570
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	19.820
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	17.750
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.300
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	16.080
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	16.810
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	16.610
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	16.610
SRP279888	Gastro	Gastrodia elata tuber	23.72
	Juven	Juvenile tuber	27.64
	Mother_Gastro	Mother tuber of Gastrodia elata	25.96
	Mother_Juven	Mother tuber of Juvenile	28.88