Gene detail

Detail information of GWHGAAEX007342/evm.TU.scaffold_2.154

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2005	26S proteasome regulatory complex, subunit RPN1/PSMD2
nr	gi\|743776123\|ref\|XP_010918461.1\|	PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A-like [Elaeis guineensis]
Swissprot	tr\|Q9SIV2\|PSD2A_ARATH	26S proteasome non-ATPase regulatory subunit 2 homolog A
trEMBL	tr\|M0RUP5\|M0RUP5_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P23150_001}
TAIR	AT2G20580	26S proteasome regulatory subunit S2 1A

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	6593899	6613820	-

Transcript Sequence
>GWHTAAEX007342 ATGTCCGCCAATAAAAACCCTAGCAGCTCTGCGCCGCCGGAGCAGGCATCAAAACTCCCGTCCAGCGATCTAAAGAAAAAGAAGGATGAGAAGAAGGAAGAAGATCTCTCTGATGAGGACCTGGCGCTGAAGCAGCAGCTTGAGCTGTATGTCGAACGCGTTCAGGATGCGAACCCCGGGGTCCAGAAGCTCGCACTAGAGAGCATGAGGCAAGAAATTAGATCGGCAACAAGCTCGATGACTTCTGTTCCTAAACCTCTGAAATTTCTTCGTCCCCATTTTGGAATCTTAAAGGCGTACTTTGAGACAATGCCTGAATCTGATCTAAAGAAGTACCTGGCTGATATACTTTCAGTGTTGGCATTGACCATGTCAGCTGAAGGAGAAAGGGAGAGTCTGAAATATAGATTATTGGGTTCCGAGGGAGACATTGGTTCTTGGGGACATGAGTATGTACGGAACCTTGCTGGAGAAATTTCACAAGAGTTTGCTAAGCGTCAGTATGATGATCTGCCCATAGATGCTCTTATGGAGCTTGTACAGCAAATTGTTGCTTTTCACATGAAGCACAATGCTGAGCCGGAAGCTGTGGATCTTCTGATGGAGGTGGAAGATCTTGATCTGTTAGTTGAGCATGTTGACTCTACTAATTATAAAAGAACATGCTTATACCTTACCAGTTCTTCCAGCTATCTCCCGAGCCCTGATGACATTTTGGCTCTAGATATAGCTTATACAATTTATATGAAGTTTGAAGATCTTGCGAGCTCTCTTCGTATTGCACTTCTTCTGGATAATATGCAGTATGTCAAGCAAATATATACATCGACAAATGACTCTTTATTGAAGAAGCAATTCTCATATATCTGTGCACATCATGGTATAGCGTTGGAGCTAGATAAAGAATGGATTCCAGATGAAGATGAAAGAGAGGTTTTGCAGGATATTGCAAACAATGCTAAACTAAGTGAAGGTTATCTTACGCTTGCTCGTGATATTGAGGTCATGGAGCCTAAATCTCCAGAAGACATTTATAAGGCACATTTGATTGATGGTCGATCCAGTGCAAGTTCCAGCCTTGATTCAGCCCGACAGAATTTAGCTGCTACTTTTGTGAATGCGTTTGTGAATGCAGGATTTGGCCAGGATAAATTAATGACTGTTTCCTCTGAATCCTCGAGTGGAAGTGCTTCAGGCACTTGGCTATTTAAAAATAAGGATCATGGAAAAGCTAGTGCAGCTGCAAGTCTGGGGATGATTTTGTTGTGGGATGTTGACTCTGGTCTTGCACAAATCGACAAGTTTCTTCACAGCAATGACAATCACGTTGTTGCAGGGGCTCTGCTTGGTGTTGGCATTGTTAACTGTGGTATCAGGAATGACTGTGATCCTGCATGGGCTCTTCTAAGTGAATTCATTGAAAAAGATGACACGGTTATCAGAATTGGGGCAATTTTGGGCCTTGGCATTGCATATGCAGGGACAAACAAAGACAAACTAAGAGTCTGCCTTACTAGCATTCTGGGAGATGCAAAATCTCCGCTTGAGGTACTTGTATTTTCCGCGATCACACTGGGGCTTGTCCATGTTGGCTCCTGTAATGAAGATATTGCTCAGACAATTATTTTGGCAATAATGGAGCGCACTGAAGCTGAATTGAGTGAACCTCTCACTCGTCTGCTTCCGGTAGCTCTTGGTCTTCTATATCTCGGCAAGCAGGATAGCGTTGAGGCTACCGCGGAGGTCTCCAGAACATTTAATGAAAAGATTCGGAAGTATTGTGATGTTACACTTTTATCTTTAGCTTATGCTGGGACAGGAAACGTGCTGAAGGTTCAAAAGCTATTGGGTTACTGTGCTCAACATCTTGAAAAGGGTGAGGTACATCAGGGCCCTGCAGTTCTTGGCATTGCTTTGGTCGCAATGGCAGAAGAATTGGGACTTGAAATGGCTATTAGATCGCTAGAACATCTTCTTCAGTATGGTGAACAGAATATTAGGAGGGCTGTGCCTTTGGCTCTTGGTATTCTATGCATATCAAATCCTAAGGTAAATGTGATGGATACTTTGAGCCGACTGAGTCATGACGCCGATACTGATGTTTCTATGGCAGCTATAATTTCCTTAGGCTTGATAGGAGCCGGCACCAACAATGCCAGGATCGCTGGCATGCTTAGAAATCTATCAAGTTATTACTACAAAGAAGCTGGCCACCTATTCTGTGTGAGGATAGCGCAAGGCCTTGTGCATCTTGGCAAAGGATTATTGACTCTGTCTCCATACCATTCTGACCGTTTTCTGTTATCTCCGACGGCGCTTGCTGGAATAGTTACAGTCTTGCATGCCTGCCTTGATATGAAATCTATTGTTCTGGGAAAGTACCACTATATGCTCTACATTCTTTCTCTGGCTATGCACCCCAGGATGTTAATGACTGTTGATGAAAACCTGAAGCCCTTATCTGTGACTGTACGAGTTGGGCAGGCAGTTGATGTGGTGGGTCAAGCTGGACGCCCCAAGTCTATCACTGGATTCCAAACGCATTCAACTCCTGTGCTGCTCGCAGCCGGGGAACGGGCAGAACTAGCAACTGAGAAGTACATACCACTTACTCCTGTTTTGGAAGGCTTTGTCATCTTGAAGGAGAACCCCGAGTACCAGGAGGATCATTAA

Network for GWHGAAEX007342

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03028	PSMD2, RPN1	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0042176	Biological Process	regulation of protein catabolic process
GO:0030234	Molecular Function	enzyme regulator activity
GO:0000502	Cellular Component	proteasome complex

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	133.920
SRP064423	SRR2545915	Juvenile tuber	111.150
SRP108465	SRR5643513	five period of Gastrodia elata	77.050
	SRR5643514	five period of Gastrodia elata	84.000
	SRR5643515	five period of Gastrodia elata	72.560
	SRR5643524	five period of Gastrodia elata	81.360
	SRR5643525	five period of Gastrodia elata	67.550
	SRR5643528	five period of Gastrodia elata	74.060
	SRR5643658	five period of Gastrodia elata	67.580
	SRR5643659	five period of Gastrodia elata	83.390
	SRR5643660	five period of Gastrodia elata	89.790
	SRR5643661	five period of Gastrodia elata	81.310
	SRR5643662	five period of Gastrodia elata	69.930
	SRR5643663	five period of Gastrodia elata	74.940
	SRR5643664	five period of Gastrodia elata	72.560
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	95.870
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	94.180
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	106.480
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	92.630
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	111.490
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	102.940
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	102.840
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	105.800
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	114.650
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	115.420
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	107.730
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	107.730
SRP279888	Gastro	Gastrodia elata tuber	83.45
	Juven	Juvenile tuber	101.71
	Mother_Gastro	Mother tuber of Gastrodia elata	67.05
	Mother_Juven	Mother tuber of Juvenile	84.59