Detail information of GWHGAAEX007343/evm.TU.scaffold_2.156
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|332980995|ref|YP_004462436.1| | 1.00E-72 | SNF2-like protein [Mahella australiensis 50-1 BON] |
| KOG | KOG0384 | 0 | Chromodomain-helicase DNA-binding protein |
| nr | gi|743877201|ref|XP_010907831.1| | 0 | PREDICTED: protein CHROMATIN REMODELING 5-like isoform X2 [Elaeis guineensis] |
| Swissprot | tr|F4IV99|CHR5_ARATH | 0 | Protein CHROMATIN REMODELING 5 {ECO:0000303|PubMed:16547115} |
| trEMBL | tr|M0TUR3|M0TUR3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P29610_001} |
| TAIR | AT2G13370 | 0 | chromatin remodeling 5 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000010 | 6762926 | 6809145 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007343
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00385.23 | Chromo | 523 | 577 | 3.90E-15 |
| PF00176.22 | SNF2_N | 630 | 902 | 1.70E-65 |
| PF00271.30 | Helicase_C | 930 | 1043 | 4.30E-21 |
| PF13907.5 | DUF4208 | 1523 | 1616 | 6.00E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SNF2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 31.880 |
| SRR2545915 | Juvenile tuber | 23.620 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.680 |
| SRR5643514 | five period of Gastrodia elata | 15.720 | |
| SRR5643515 | five period of Gastrodia elata | 18.120 | |
| SRR5643524 | five period of Gastrodia elata | 16.910 | |
| SRR5643525 | five period of Gastrodia elata | 16.280 | |
| SRR5643528 | five period of Gastrodia elata | 13.800 | |
| SRR5643658 | five period of Gastrodia elata | 14.680 | |
| SRR5643659 | five period of Gastrodia elata | 22.650 | |
| SRR5643660 | five period of Gastrodia elata | 24.480 | |
| SRR5643661 | five period of Gastrodia elata | 21.590 | |
| SRR5643662 | five period of Gastrodia elata | 21.570 | |
| SRR5643663 | five period of Gastrodia elata | 24.840 | |
| SRR5643664 | five period of Gastrodia elata | 26.620 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 18.690 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.460 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 19.430 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.770 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 21.600 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 22.670 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.670 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 21.140 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.400 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 22.570 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 18.330 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 18.330 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 27.36 |
| Juven | Juvenile tuber | 20.89 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 21.51 | |
| Mother_Juven | Mother tuber of Juvenile | 29.20 |