Detail information of GWHGAAEX007348/evm.TU.scaffold_2.162
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|743794690|ref|XP_010924238.1| | 4.12E-143 | PREDICTED: phytochromobilin:ferredoxin oxidoreductase, chloroplastic isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q9SR43|PFBS_ARATH | 2.00E-111 | Phytochromobilin:ferredoxin oxidoreductase, chloroplastic (Precursor) |
| trEMBL | tr|M0S5T2|M0S5T2_MUSAM | 1.00E-135 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P06910_001} |
| TAIR | AT3G09150 | 7.00E-111 | phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2) |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000010 | 7325846 | 7360909 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007348
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05996.11 | Fe_bilin_red | 16 | 239 | 1.70E-57 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08101 | HY2 | Biosynthesis of secondary metabolites | map01110 |
| Porphyrin and chlorophyll metabolism | map00860 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0010024 | Biological Process | phytochromobilin biosynthetic process |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0050897 | Molecular Function | cobalt ion binding |
| GO:0016636 | Molecular Function | oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.220 |
| SRR2545915 | Juvenile tuber | 2.740 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.350 |
| SRR5643514 | five period of Gastrodia elata | 2.360 | |
| SRR5643515 | five period of Gastrodia elata | 2.870 | |
| SRR5643524 | five period of Gastrodia elata | 2.110 | |
| SRR5643525 | five period of Gastrodia elata | 14.050 | |
| SRR5643528 | five period of Gastrodia elata | 15.480 | |
| SRR5643658 | five period of Gastrodia elata | 16.970 | |
| SRR5643659 | five period of Gastrodia elata | 1.160 | |
| SRR5643660 | five period of Gastrodia elata | 1.200 | |
| SRR5643661 | five period of Gastrodia elata | 2.380 | |
| SRR5643662 | five period of Gastrodia elata | 0.870 | |
| SRR5643663 | five period of Gastrodia elata | 1.070 | |
| SRR5643664 | five period of Gastrodia elata | 0.990 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.790 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.450 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.490 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.900 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.130 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.390 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.270 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.360 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.150 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.340 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.340 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.33 |
| Juven | Juvenile tuber | 3.49 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.28 | |
| Mother_Juven | Mother tuber of Juvenile | 1.74 |