Gene detail

Detail information of GWHGAAEX007350/evm.TU.scaffold_2.164

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2379	1.00E-81	Endonuclease MUS81
nr	gi\|672128408\|ref\|XP_008787690.1\|	0	PREDICTED: crossover junction endonuclease MUS81 [Phoenix dactylifera]
Swissprot	tr\|Q8GT06\|MUS81_ORYSJ	3.00E-120	Crossover junction endonuclease MUS81
trEMBL	tr\|M0RTV6\|M0RTV6_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P20260_001}
TAIR	AT4G30870	1.00E-81	Restriction endonuclease, type II-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	7387143	7424976	+

Transcript Sequence
>GWHTAAEX007350 TTCGAAGTTTGAAGTGCGCGCTCTCTCCGGTCTCTGGTCTGCCGAGATGCGATGCCGGGAGAAATGGCGGCGAACGAATTCCATGTCCCGTCGAGTCATCTCCTTCCTAAAACAAACGGCTAATCTCTGACTTCCAATCATTGTTCCATGGAAAACAAGCCGCTAGTTCGTTGCAGCGACAACGAGAACATCGCGATGTACCTCTGGACGAAGAGAGAGGAGATGGTCGAGTGCGGCGCGATCTCGGACAATCTCGACATGACAATTACTAACGCCTACCGTAACATCTGCAGCTCCAAGTCTCCCATCAAGACCATCAAAGATCTTTCTCAGATTAAGGGCATAGGAAAATGGATTCTAAGGCTCATGCTTGGGTTCTTCCCCGTTGATCCTCCTTCTGACACTTCCCCGACCAAAATTGAGCACCAAAACCAAACAGGGAAGAAAGCAAAAGGACTTAAAAGATATGTTCCGCAGAAGAATTCCGTGGCATATGCATTGTTAATTACGCTTTACAGAGGCATTGCGGATGATGTTGATTTTATGAAGAAGCAGGAGCTCATTGATGCTGCTGAAGCAAGTGGGCTTTCACGGAATTCAATCAGGCCTGATAAAATTAAAGGGAAACCCGGTCAGTTTGGAAGCTCATCCAGGGACTGGTACACTGGATGGAGCTGCATGAAGACATTGATAACAAAGGGATTAGTTGCAAAGTCTAGCTGTCCAGCAAAGTACATGCTAACTCAAGAAGGCCAAGAAGTGGCGAGAGAATGTCTTTTGAGATCTGGTTTGTCTGCTGATGTTGTTGTAGGTCTGGGTGAAGGAAGAATATCTCATAGTTCTGTTGATAAGACCAATTTGGAGGCTATTTCTATAGATGATGAACCCATGAAGGATTCAAATAATTTAAACATTCAAGGAAGGGCTTCCCAACATGGTTTAATTGATTCTAGTTTTAAATGTGTTGGAAATGATTTGTCCACTACAACTTGTGTGGCATCTTTAAACAGAGACGATCTTAGAGATTATGGCTCTTTTTGTGCTTCAAATCAGTCAAGTAATATTTCCATCAGTGCAGTTCCAAGCCTTTTCAATCCAAGAGCCTGTACATCTTTTGATGTAACATTGCACAAATCGTATCAAGCTGGAGCTGGGCAAGGAGATGTGAATCCTTTGGCCATACCTCCAAGTACACTTGGGGAGAAATTTGAGGATATTTATGATGTCATATTGATTTTGGATGATCGAGAAAATTTTGGATCTCGTTCTAAAAAGGTTGTTGACATGATACAGTCACCGTTTAATATTCTTGTTGAGGTTCGCCGCTTACCAGTTGGAGATGGAATTTGGATTGCAAGACATAAAGAGTCTCACATTGAGTATGTGCTTGATTTTATTGTTGAGAGGAAAAAAGTTGATGATCTATGTAGCTCTATCAGGGACAACCGATATAGAGATCAAAAATTACGGCTTCAGAGATGTGGGATTCAAAAGTTGATTTATCTCGTTGAAGGTGATCTGAGTGCACTTGATGCTGCTGAAAGCATTAAAACAGCCTGCTTCACCACAGAAATTTTAGAAGGATTCGATGTTCAGAGGACCTCTGGCTTCGCTGACACCATCAGGAGATATGGATTTCTGTCGCTTTCAATAAAGCAATATTACAGAAAGCAATTTTCCAGGCAGAAGGCTGCTGAGAGCCGGAGAGTTTGTCCGATCTTCGATGAATTCATTAAAAGGTGCAAAGACCTTGAGAAGATTACAATTACTGACGTCTTTTCTCTCCAGCTCATGCAGGTCCCCCAAGTAACAGAGGAGATTGCTCTAGCTGTCATAGACTTGTATCCGACTCTCTTATCCCTAGCTCGTGCTTACTCTCTGCTTGAAGGCAATGTTCAAGCCCAGGAAGAAATGCTAAGGAATCAGATTAAAACTGTAACCATGGGTGCGAGTAAGAACATCTACAAGCTGGTTTGGGGCTCTTGATATCCTTAGACTAACGTTCTAAAACAAATTAAAAGCATGTACATTCCCTGTTATCCTCCCAATATCCATTCCAATACTCTGTTAGCATTATTTAAACAGCATATTCATCGAATAAAGCTGCTCGTTATTTCAATGTTTAAGCATTAATGTCCGAATTCTTGCATCATATATGTTTGATTGTTTTTATTTTTATTTTGTGAGCTTTCAATTCGGATATGTAGTGAATGAATGCGTTGCTTATATGGAAAAAAGACAGTATTATTGTTGTTGTATTTCTTTCATCATTCCTTGAAACAAAATTTTATATGTGATTGC

Network for GWHGAAEX007350

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02732.14	ERCC4	386	492	3.20E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08991	MUS81	Homologous recombination	map03440
K08991	MUS81	Fanconi anemia pathway	map03460

Gene Ontology

GO term	Ontology	Name
GO:0004518	Molecular Function	nuclease activity
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.190
SRP064423	SRR2545915	Juvenile tuber	3.960
SRP108465	SRR5643513	five period of Gastrodia elata	4.820
	SRR5643514	five period of Gastrodia elata	6.360
	SRR5643515	five period of Gastrodia elata	4.300
	SRR5643524	five period of Gastrodia elata	5.740
	SRR5643525	five period of Gastrodia elata	4.120
	SRR5643528	five period of Gastrodia elata	3.970
	SRR5643658	five period of Gastrodia elata	3.860
	SRR5643659	five period of Gastrodia elata	3.620
	SRR5643660	five period of Gastrodia elata	4.110
	SRR5643661	five period of Gastrodia elata	3.180
	SRR5643662	five period of Gastrodia elata	3.680
	SRR5643663	five period of Gastrodia elata	3.680
	SRR5643664	five period of Gastrodia elata	4.230
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	17.480
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.280
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	14.580
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.820
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	23.910
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	31.300
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	20.500
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	21.110
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	17.330
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	20.060
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.550
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.550
SRP279888	Gastro	Gastrodia elata tuber	9.04
	Juven	Juvenile tuber	5.88
	Mother_Gastro	Mother tuber of Gastrodia elata	8.31
	Mother_Juven	Mother tuber of Juvenile	10.73