Detail information of GWHGAAEX007353/evm.TU.scaffold_2.167
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|186683200|ref|YP_001866396.1| | 5.00E-16 | signal transduction protein [Nostoc punctiforme PCC 73102] |
| KOG | KOG0027 | 5.00E-53 | Calmodulin and related proteins (EF-Hand superfamily) |
| nr | gi|743878569|ref|XP_010908206.1| | 8.57E-70 | PREDICTED: probable calcium-binding protein CML10 [Elaeis guineensis] |
| Swissprot | tr|Q8RZB5|CML10_ORYSJ | 3.00E-65 | Probable calcium-binding protein CML10 |
| trEMBL | tr|C5XHV0|C5XHV0_SORBI | 1.00E-64 | Putative uncharacterized protein Sb03g045770 {ECO:0000313|EMBL:EES04217.1} |
| TAIR | AT1G24620 | 5.00E-53 | EF hand calcium-binding protein family |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000010 | 7568850 | 7571322 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007353
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13499.5 | EF-hand_7 | 78 | 138 | 2.40E-13 |
| PF13499.5 | EF-hand_7 | 151 | 213 | 3.70E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13448 | CML | Plant-pathogen interaction | map04626 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005509 | Molecular Function | calcium ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.000 |
| SRR2545915 | Juvenile tuber | 5.440 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.720 |
| SRR5643514 | five period of Gastrodia elata | 9.740 | |
| SRR5643515 | five period of Gastrodia elata | 16.540 | |
| SRR5643524 | five period of Gastrodia elata | 7.790 | |
| SRR5643525 | five period of Gastrodia elata | 58.260 | |
| SRR5643528 | five period of Gastrodia elata | 32.390 | |
| SRR5643658 | five period of Gastrodia elata | 56.320 | |
| SRR5643659 | five period of Gastrodia elata | 11.600 | |
| SRR5643660 | five period of Gastrodia elata | 5.040 | |
| SRR5643661 | five period of Gastrodia elata | 10.510 | |
| SRR5643662 | five period of Gastrodia elata | 22.600 | |
| SRR5643663 | five period of Gastrodia elata | 11.180 | |
| SRR5643664 | five period of Gastrodia elata | 87.270 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 23.710 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 19.730 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.900 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 21.330 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 21.960 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 20.320 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 32.800 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 24.350 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.510 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 30.080 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 24.000 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 24.000 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.99 |
| Juven | Juvenile tuber | 8.90 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 39.48 | |
| Mother_Juven | Mother tuber of Juvenile | 18.02 |