Gene detail

Detail information of GWHGAAEX007357/evm.TU.scaffold_2.172

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG3566	Glycosylphosphatidylinositol anchor attachment protein GAA1
nr	gi\|743880228\|ref\|XP_010908595.1\|	PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Elaeis guineensis]
trEMBL	tr\|M0RHN6\|M0RHN6_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P12600_001}
TAIR	AT5G19130	GPI transamidase component family protein / Gaa1-like family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	7778390	7820525	-

Transcript Sequence
>GWHTAAEX007357 TGTGGATTGTCTGCATAAATGGAGATGAATGTGAAGCATCTTAAAAGAATATACATACAATGGACATAGTTAGAGACGAAGATAACCAGAAGGCTACTCATTTCAAATCTTGAATCTGCTGCTGATGGCACCAATCTTGAAAGAATAATCATATTTGATTCCGTAAAAAAGGGCTGAAATTAGTCGCAGCAAAACAATAAATTCGATGGCAAATTTACTGATCAGCCCCAACAGTAGACGACAGTCGCCGTTCCCATCTCTATATCCGTCTTTTACAACGCGGGCGCCCATCTCCGGTGCTCCACTTCCCTGACATCGCCACATCACTGATCCCTCGCAGCAATCCGTCAATTCTACGAGCTCACTAGCCTCAAAACCCATTCCTCTGCAGCGACGCCCGAAGTCTCTGTAGGATTTGTAACCGAATGCGATGGCCGTGGAGGAGGCACAGATGCCCTCGGCCTATAGGAAGTCCAGAATCATCGTTCGTTTCGGTTCCTTCTTGGTATCTCACAGCGCCCTAGTCAGTGTAATCTGTTGTGTCGCTGGGTGCACAGCCCTTCTCCTGCTTCCGGCGCTTGCAAAGAAAACCCATGTATCAGAAAATGCTCTCATGCCAGGCTCTGCAAATCCCATGCTTTCCCATCATGATGTACAGGAAGCAAACAGATTTGTTAAAGATATTTTAAAGAAGAGAATCATGGAAGACAGGCTAGAGAGGGAGATTGCAAGATTGATAGGAAAGCGCATGGAAGATGTATGTTCTGAAGTGTATTATCATAAATTCAAATCGCATGAAATTTCATTCCATCCACTTCATTTCTTTTCTTCAACCTCTGGCACAGTGGTTCTGCAAAATAGCAGTGATTGTACTCTAAATGGTGTCAGTCCTGTGGGAATCATACGAGCTCCTCGTGGAGATGGTAAAGAATCAATTGTATTAGTAACCCCTTATAATTCTGAGAATATCAAATTGAATGAAGCCTTGTCACTAGGACTTGCCTATTCAGTTTTTTCACTTCTTAGCCGAGCTGTATGGCTTGCAAAAGATGTTGTTTGGCTAGCTGCAGATTCACGCTATGGTGAGTATACAGCAGTTGCTTCTTGGCTTAATGACTACCATAATCCTATTTTCTCAAGTGATTTGGGAAAATTTGGTGTTGACATGTGCCTTGAAAAAATCAAATTTCAAGATGAAAGTAAGACTATATTTGGTGGAGTGGCTGGTGATGATTTCAGACGAGCTGGAACTATGGCCGCTGCTCTTGTTATTAAGGTCATGAATAAGGAAAAAATTGAAAAGGATAGACTTGATATATATGCTGAGGCATCCAATGGACAGATGCCAAACCTTGACCTTATAAATATTGTACATTTATTGGCTGTTCACAGACAGGGCTTGCAAGTGAAGATCGGGACATTTGACTTTTTGCTTAATTCGGCATTTCTCAAGCAGCTTGGCAAAATACTGCAGTTACTTTCAGGGCTGGCTCAAAGCTTTTATCCTGGATGGAAATTGGATGTTAATTCTGATGATTTTGTTGATGGCGCTGCTACTCTTGCAAGCTCAATTTATTATCAAGCACTTGGGGTTCCCACCGGACCTCATGGAGCTTTTCGAGATTTTCAAATTGATGCAATGACCATAGAACTCACGCCCAAGACTTCTCTTACTGACGAAAATGGTTTATTTTCCTTTAGCTTGAGAGGAGGAAGGTTGATTGAAGGAGTCATTCGGTCGGTGAATAATCTCCTTGAGAAGTTCCACCATTCCTCTTTCTTGTACTTCTTAACAGCTCCAAACAAGTTTGTCCCTGTGAGTGTTTACATGCTTGTGTTTGCACTGCTCGTGGCTCCTCTTCCCATAGCATCTGCTGCTCTTTTCTCCTCCATCGCCACGTCAAACAGCAGTAAGTCGACTTCTGAGTCTGTAACATCGCTTGGATCATGGAACTGGATACATTCAGCAAAATTAGTGCTCCTTACTCACCTATGGGCACTTATCGTCTCATTACTTCCTTTATTCATAACTCTAATGCCCTGCACTAGCTCAGCAATGAGCTTGTTTGCTTGGGCCGCACTTTCTCTTACCTTTCTTGTATTACTCTGCCTGCTTGTGGGCTTCACAAGTTCATACCCGTGGAAAGTTTTGAAAGCGGTGATGATAGCTTCGGTTTCAATAGGCCTAAGCCTTATGTCAATAATAAATTTCTCAACTGCACTGATTGGGTCCATTTTTCTTGTTCCGATGTGCCTCTTAGTGCGGCCTCTGAAGGCACCACCGATGCAAGAATTCTTTTTTCTAAAAGTGGCGATCAGACTTTTGAACCTGTTGTTCGTAGCGGCAGCATTCCCCCCGGCTTCTTTGGCGGTATTGAAAGGATTGCTTAATGGATTTGGGAGTGTCGGCATCGGTGACTTTTGGGAATGGGCAGAGTTCTTGTGGGTTTGGAACAGCGCTACTTATTTATATGTAACCCTGGTGCATCTTCCCTGCTGGTATTTGTGCCTGCGTATTCTACTCCTTCATTAACAGCACTGTTGTTCTAATAAATTACATGCTGAGACATCTATTTTCGTATGAGCATGGAAAACTTTTCAATCTTCTTGGCATCTGCGGTTGTTCTATAGCTACATGTTATTGACCCTGAACGATTGTTCCAGAATGGTAGTATTGCAGAGATTATTAAAAAGTTATGTGATTTATTCATGCCTGGGGTGTTAGTTTGAATGAGATTTATCAATCTTTAGTCGCTTCATTTGTGCATGCTCTGCATCTTTATGGACTAAAAACAAGGTGAGGGTATCTTAACCTGATTCTTTCATCATCAATACGTGGCGTTACAATTGTCCTTCATGCTTTCTCCTCTTTTATTTTTTGTACTAAATATCCATGGTGGTTGAACTCAATCAGGCCATTTATATATAAATGCATGCATCCACGTGGGTATATGTTCTTGTAGGACTCAGTTGTCATTAAATTTGTGACCGAAAACTTTTGATACTATTTTTTTCATTTCAAG

Network for GWHGAAEX007357

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04114.13	Gaa1	152	693	2.80E-97

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05289	GAA1	Metabolic pathways	map01100
K05289	GAA1	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	map00563

Gene Ontology

GO term	Ontology	Name
GO:0016021	Cellular Component	integral component of membrane
GO:0042765	Cellular Component	GPI-anchor transamidase complex

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	21.240
SRP064423	SRR2545915	Juvenile tuber	18.390
SRP108465	SRR5643513	five period of Gastrodia elata	21.900
	SRR5643514	five period of Gastrodia elata	28.690
	SRR5643515	five period of Gastrodia elata	23.830
	SRR5643524	five period of Gastrodia elata	27.830
	SRR5643525	five period of Gastrodia elata	23.900
	SRR5643528	five period of Gastrodia elata	20.050
	SRR5643658	five period of Gastrodia elata	27.070
	SRR5643659	five period of Gastrodia elata	13.790
	SRR5643660	five period of Gastrodia elata	12.180
	SRR5643661	five period of Gastrodia elata	15.190
	SRR5643662	five period of Gastrodia elata	11.490
	SRR5643663	five period of Gastrodia elata	13.980
	SRR5643664	five period of Gastrodia elata	10.190
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	25.360
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	31.390
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	24.210
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	25.380
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	20.140
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	21.370
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	23.090
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	18.910
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	25.710
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	21.970
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	31.030
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	31.030
SRP279888	Gastro	Gastrodia elata tuber	8.89
	Juven	Juvenile tuber	12.71
	Mother_Gastro	Mother tuber of Gastrodia elata	14.52
	Mother_Juven	Mother tuber of Juvenile	8.92