Gene detail

Detail information of GWHGAAEX007358/evm.TU.scaffold_2.175

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|479130773\|ref\|YP_005070733.1\|	6.00E-53	SNF2 helicase homolog [Arthrospira platensis NIES-39]
KOG	KOG0388	0	SNF2 family DNA-dependent ATPase
nr	gi\|743785355\|ref\|XP_010921883.1\|	0	PREDICTED: DNA helicase INO80-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q8RXS6\|INO80_ARATH	0	DNA helicase INO80
trEMBL	tr\|D7THS3\|D7THS3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI29799.3}
TAIR	AT3G57300	0	INO80 ortholog

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	7997780	8022700	+

Transcript Sequence
>GWHTAAEX007358 TTAAATGTACGAGCTTATATGTAATTTTCCCCAAACAGTTGCTCCTCTTCCTCCGCCAGGACCTGAATGCAGCCAGAACCCTCGGCGCATGATAGTGGTCCCAAAGCGGTGCAAGATAGGACCTTCCGCGCACTCATCTTCTCTCTCCTCCCAAGCTCATTTTTTCCCTATACACAGCCTCATCGCACGCTCGCCATGCCTTTTTCCGTTTCTTGCCTCCAATTGTTCCCTTTTTATCTCCGTCGGTCGGGTCACGCGTGCTGCTGTCGCTTGCCTTTGCTCCCTTGCCCTTCTTGTTCTTCGCTCTCGTTTCCGTCGTTCGACGGCGACGCAGTGGGGAAGTCGGGTTAGGGCTTCTGTACGTGTATTTCCGTTTTTGTTGCTCTTATTCTTCTTTCGCCTACCGTACGCGTGGGTTGAAGGCAAAGACGATCATGGATCCGCGCCGAGGCAATAAGAACGGACTTTCCTACTCGGATCTCTTCAATCTTGAGTCCTTGACGAACTATCAACTCCCACGACCTGATGATTTTGATATTTATAGCAACAGTAGTCAGGATGATAGTAAGGATAGCCAAGGACCAACAACCATGATGGATCAGTCTAATGGTTCTGTAATTGACAGGCCTCTTGACATTACAAGGAGGCTAAATAAGGTGATGTTTGATTCTGAAGGTGGTTTGGAATCTTTCATACGAAAAGAGCCTGAGGACAATGAAGAAGATGGCGATAACTACGGAACTGGAATCTCTGATGAACATTATCGTTCAATGCTCAGTGAACACGTGCAGAAGTACAGGAGGGTGAAACTTAAAGAATCTTCCACAGCTTCAGTTTCAAATCGAATGGCAGTGCCTATTTCTAAAAGGAGCCGTTGCTTGAAAGGGGGGAAAATGTCCAATGAACCCTTAGTTTCTGTCAAGGAGGAAGCAACATTTCGTGAAATTGATATGTCTCCTGAATGTGATGAAGCTGATTTTGATTTGGACTATGGGGAAAGCAATAGGTGTGCTTTCTCCTTGGATTCTTCTTATTTGGATATTGGGGAGGGAATTACATATCGTATTCCTCCAACTTATGATAAATTGTTGGCTTTGTTTAAGCTACCAAGTTACTCAGACATAAGAATAGAAGAGAATTTTCTTAAAGGAACTTTGGATTTACGGTCTCTAGCAGCTATGATTGCTTCTAACAGGAGACATGAAGGTCAAAATCATGGGGGATTGGGTGAACCTCAGCCTCAATATGAATCACTGCAAGCCAGATTAAAGGCTCTTTCATCAAATAACTCAAATCAAAATTTTACTCTTAAAGTTGATGTTAGTTTTGATCCTCACTCAATTCCTGAAGGTGCAGCTGGTAGGATTCGAAGGTTGATTATGTCAGATTCTGGCACCCTGCAGCTTTATTATGTTAAAGTTATTGAAAGAGGCGATACATACGAGATTATTGAACGCAGTTTGCCTAAGAAGAAAACAGTGAAAAAAGATCCTTCTGTGATTGAGAAAGAGGAGATGGAAAAAATTGGGAAAGTTTGGGTTAACATTGCAAGAAGAGATATTCCCAAACATCACAAATTTATAACAAGTTTGTTCCGTAAGCAAATAACTGACGCCAAACGCTGTTCGGAAACGTGCCAACGAGAGGTAAAACTAAAAGTTAGCAGGTCGATCAAGCTGATGCGAACGGCCCCAATTCGCACTAGGAAGCTTGCTAGAGACATGTTGATATTGTGGAAAAGAATAGATAAAGAGCAGGCAGAGGTAAGAAAAAAGGAGGAACGAGATGCTGCCGAAGCTTTGAAGCGTGAAGAAGAACTTCGAGAAGCAAAGAGGCAACAGCAAAGGCTCAACTTTTTATTATCTCAAACTGAGCTCTACAGCCATTTTATGCAGAACAAGGCTTATTCTCAACCGACTGAAGCTTTAGCTGGGACAGAGGGTGAAGACCAAGAAATGACATCAAGTGAGGATATTAAATCCAGGGATGAAGAGGATCCTGAAGAAGCTGAATTAAAGAGGAAAGCTCTTAAAGCTGCACAACATGCTGCATCACAGCAAAGAAAGTTAACAGATGAATTTGACAGTGAATGTATGCGGCTTAGGCGAGCTGCTGAACCTAAAGATTCTGCAAATCAATCATCATTTATGGGATCTTCAAATATAGATCTTCTGCACCCATCAACAATGCCTGTTAAATCTTCAGTGGAAACGCCAGAGCTGTTTAAAGGCACTCTTAAAGAGTATCAGTTAAAAGGATTGCAGTGGCTTGTTAATTGTTATGAGCAAGGCTTAAATGGTATCCTTGCTGATGAAATGGGCTTAGGAAAAACCATTCAGGCCATGGCATTTTTGGCTCATCTAGCAGAGGAGAAAAATATATGGGGCCCTTTCTTGGTTGTTGCTCCTGCATCAGTACTAAACAATTGGGCTGATGAAGTTAATCGTTTCTGTCCTGATTTAAAGACGCTTCCATACTGGGGCGCACTACCTGAAAGAATGGTTCTTAGGAAAAATATTAATCCAAAGCGCCTGTATAGAAGGGAGGCTGGATTTCACATTCTGATTACGAGCTACCAGCTACTTGTGACTGATGAAAAGTATTTACGTCGGGTGAAGTGGCAATATATGGTTTTAGATGAAGCACAAGCTATAAAGAGTTCAAATAGCATACGTTGGAAGACTTTACTGAGCTTTAACTGTAGAAATCGCTTGCTTTTAACTGGAACCCCCATACAAAATAACATGGCAGAGTTATGGGCCCTTCTTCATTTCATAATGCCAACACTGTTTGATAGTCACGAACAATTTAATGAATGGTTTTCTAAGGGCATTGAGAGCCACGCAGAGCATGGCGGCACTCTAAATGAGCATCAACTAAATCGGCTGCATGCTGTTCTCAAACCATTTATGTTACGGCGTGTTAAGAAAGATGTCATATCAGAAATGACTTTGAAGAAGGAAATCACAGTGCATTGTAAACTAAGTTCAAGACAACATGCATTTTACCAGGCTATAAAGAATAAAATTTCGTTGTCTGAGCTTCTTGATGGACATCGCGGGCATCTAAATGATAAAAAAATTGTTAACTTGATGAATATTGTTATACAATTGCGTAAGGTGTGCAACCATCCAGAATTATTTGAGAGAAATGAGGGTAGCTCATACTTGCACTTTGCAGAAATTCCCAACTCTCTGCTGCCTCCTTCTTTTGGAGATTTAGAGGACGTTTGCTACTCTGGAGATTGTAATCCCATATCATACAAGGTTCCAAAGATTGTCTACCAAGAACTTGGTAGACGTGCTGGGACGCCTTATCCAGTTTCTGGTCTCTTGAGTCAGGAATTTTTGTACAGACTTTTTAATATATTTTCTGCCAATAATATTCATCAGTCATCTTTGTCAAAATGTTCAGACTTCTCTTCTTCGAATTCTGGAACGTTTGGCTTTACTCGTTTCATAAATCTATCAACCTCAGTGATCTCGTTCCTAGCAAGGTGTTCTTTTCTCGAGAGGTTATTTTTTTCTGCAGTTAGCTGGGATGGGCTGCTTAAAGATGAAATATTGGATTATTTTTTGAATTTTAAGAGCAATGACCCTGAATATAATAAATTAGAGAAAGGGACACTGAGGGCTGTTGCACGGATGCTGCTATTGCCAACAAAATCTGAGTGTATATCGCTTAGGAGAAAATTTGCAACTGGGCATGTTGACGATCCGTTTGAATCTTTAGCTATTTCTCATCAGGATAGGTTAATGTCAAACATAAGGCTCTTGAGGTCTACCTATGCATTTATTCCTCGAGCTAGAGCGCCTTTGATAAATTCTTTTTGCCCTGACAGAAGCTTTGCATATCAAGCAGTTGAGGAGTTGCAGCATCCTTGGGCAAAGAGGCTATTTGTTGGGTTTGCTCGCACATCAGAGTTCAATGGCCCTAGAATGCCCAGCAGTCCTCATCACTTGATAGAAGAGATTGATACAAAAGATTTTTCTTTTAGGCCGGCTCTTGAGCTATCACACAGGATCTTTGGCTCTAGTCCACCCATGCAAAGTTTTGACCCAGCTAAAACGCTTTCGGATTCTGGTAAACTTCAGACATTGGATGCACTGTTAAAGCGCCTTCGTGCTGAAAATCATCGTGTGCTTCTATTTGCTCAAATGACAAAAATGTTGAATATTCTAGAGGATTATATGAATTACAGAAAATACAGATATTTTAGACTTGATGGATCATCCACTATAATGGATCGTCGCGACATGGTTAGAGACTTTCAGCGCAGGAATGATATTTTTGTTTTCTTACTAAGTACAAGAGCTGGTGGGCTGGGAATAAATCTGACCGCTGCTGATACTGTCATTTTTTATGAAAGTGATTGGAACCCAACATTAGATTTGCAGGCAATGGATAGGGCACATCGTTTAGGTCAAACTAAGGAGGTGACTGTGTACCGGTTGATTTGCAAAGAAACGGTTGAAGAAAAAATTTTGCAGAGGGCAAGTCAGAAAAATACTGTCCAGCAGTTGGTTATGACAGGTGGGCATGTGCAAGGCGATTTATTGAAGCCTGAAGATGTAGTTTCTCTGTTGCTCGATGACGCCCAGTTGGAGCAGAAGCTCAGAGAAATACCACTGCAGGTCAAGGATAGAACTAAAAAGAAGCGAGGAGGAAATAGGGGAATACGTGTTGATTCTGACGGGCTGGTGTCATTGGAAGAGCTTGATAATAATACTGAATCTCAGGGTATGTCGGACAAACCAGCAGAGAAGTCGAGCAACAGAAAGAGGAAACCGGGTTCCAATAAACAAGGCTTATCAAGGTCGACGAATCCTCTGGAGTCTTTGTCCCTCGCAGATTCACCCTTGGAGGCAGATGAAGCCCTCCCGACGGCTTTGGAGGAGATGCCGCCTCGACCAAAGAGGGCCAATAAAAATGCTGTTATTAACAGAAACCTTGAGTCTTCACCCGCGCATGCCTCTGTGAACCCCGCTGACCAATTGCTTTTGTCGGCACTCGATCAGACTTCTGAGATTGACCGAGCTGTCGATTCAGAGAGCAACAGCAGAAAAGCAGTAGTGTGAAGCAATCAATGGTGGATGCTTGAAGAGTGCTATGATGCTTTCA

Network for GWHGAAEX007358

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13892.5	DBINO	362	490	1.50E-45
PF00176.22	SNF2_N	613	902	3.30E-65
PF00271.30	Helicase_C	1218	1330	2.10E-17

Protein Sequence

>GWHPAAEX007358
MDPRRGNKNGLSYSDLFNLESLTNYQLPRPDDFDIYSNSSQDDSKDSQGPTTMMDQSNGSVIDRPLDITRRLNKVMFDSEGGLESFIRKEPEDNEEDGDNYGTGISDEHYRSMLSEHVQKYRRVKLKESSTASVSNRMAVPISKRSRCLKGGKMSNEPLVSVKEEATFREIDMSPECDEADFDLDYGESNRCAFSLDSSYLDIGEGITYRIPPTYDKLLALFKLPSYSDIRIEENFLKGTLDLRSLAAMIASNRRHEGQNHGGLGEPQPQYESLQARLKALSSNNSNQNFTLKVDVSFDPHSIPEGAAGRIRRLIMSDSGTLQLYYVKVIERGDTYEIIERSLPKKKTVKKDPSVIEKEEMEKIGKVWVNIARRDIPKHHKFITSLFRKQITDAKRCSETCQREVKLKVSRSIKLMRTAPIRTRKLARDMLILWKRIDKEQAEVRKKEERDAAEALKREEELREAKRQQQRLNFLLSQTELYSHFMQNKAYSQPTEALAGTEGEDQEMTSSEDIKSRDEEDPEEAELKRKALKAAQHAASQQRKLTDEFDSECMRLRRAAEPKDSANQSSFMGSSNIDLLHPSTMPVKSSVETPELFKGTLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEVNRFCPDLKTLPYWGALPERMVLRKNINPKRLYRREAGFHILITSYQLLVTDEKYLRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIESHAEHGGTLNEHQLNRLHAVLKPFMLRRVKKDVISEMTLKKEITVHCKLSSRQHAFYQAIKNKISLSELLDGHRGHLNDKKIVNLMNIVIQLRKVCNHPELFERNEGSSYLHFAEIPNSLLPPSFGDLEDVCYSGDCNPISYKVPKIVYQELGRRAGTPYPVSGLLSQEFLYRLFNIFSANNIHQSSLSKCSDFSSSNSGTFGFTRFINLSTSVISFLARCSFLERLFFSAVSWDGLLKDEILDYFLNFKSNDPEYNKLEKGTLRAVARMLLLPTKSECISLRRKFATGHVDDPFESLAISHQDRLMSNIRLLRSTYAFIPRARAPLINSFCPDRSFAYQAVEELQHPWAKRLFVGFARTSEFNGPRMPSSPHHLIEEIDTKDFSFRPALELSHRIFGSSPPMQSFDPAKTLSDSGKLQTLDALLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSTIMDRRDMVRDFQRRNDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKEVTVYRLICKETVEEKILQRASQKNTVQQLVMTGGHVQGDLLKPEDVVSLLLDDAQLEQKLREIPLQVKDRTKKKRGGNRGIRVDSDGLVSLEELDNNTESQGMSDKPAEKSSNRKRKPGSNKQGLSRSTNPLESLSLADSPLEADEALPTALEEMPPRPKRANKNAVINRNLESSPAHASVNPADQLLLSALDQTSEIDRAVDSESNSRKAVV

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	28.190
SRP064423	SRR2545915	Juvenile tuber	23.730
SRP108465	SRR5643513	five period of Gastrodia elata	22.910
	SRR5643514	five period of Gastrodia elata	23.600
	SRR5643515	five period of Gastrodia elata	22.730
	SRR5643524	five period of Gastrodia elata	23.430
	SRR5643525	five period of Gastrodia elata	29.330
	SRR5643528	five period of Gastrodia elata	24.360
	SRR5643658	five period of Gastrodia elata	27.090
	SRR5643659	five period of Gastrodia elata	23.770
	SRR5643660	five period of Gastrodia elata	27.060
	SRR5643661	five period of Gastrodia elata	26.260
	SRR5643662	five period of Gastrodia elata	25.380
	SRR5643663	five period of Gastrodia elata	25.700
	SRR5643664	five period of Gastrodia elata	24.580
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	21.200
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	19.150
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	22.720
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	23.470
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	26.860
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	30.010
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	25.220
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.830
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	24.270
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	24.890
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	20.540
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	20.540
SRP279888	Gastro	Gastrodia elata tuber	43.48
	Juven	Juvenile tuber	33.26
	Mother_Gastro	Mother tuber of Gastrodia elata	36.73
	Mother_Juven	Mother tuber of Juvenile	33.68